Literature DB >> 12893876

Advantages of external periodic events to the evolution of biochemical oscillatory reactions.

Masa Tsuchiya1, John Ross.   

Abstract

We compare, by calculations on a simple model of glycolysis, the evolutionary development of oscillatory reaction mechanisms in the presence and absence of external periodic events, such as an oscillatory or constant influx of glucose in an open reaction system. The chosen model has autonomous oscillations for given choices of the parameters of the feedback loops responsible for the oscillations, and for a given range of the total adenylate pool concentration. We change first one, then two of the parameters, so that there are no autonomous oscillations, and then vary these parameters with a genetic algorithm method in which the parameters are represented by binary strings that evolve by selection, crossover, and mutations; the optimization goal is the attainment of a high ATP/ADP concentration ratio in the system. This goal is taken to provide evolutionary advantages and is shown to be achieved more quickly in the presence of external periodic events, rather than constant influx of glucose. The results suggest the possibility of the enhanced evolutionary development of oscillatory biological reactions at shores where waves impinge on rocks and bring nutrients periodically. Measurements have shown that animals and plants grow more rapidly in the presence of such wave action than in its absence.

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Year:  2003        PMID: 12893876      PMCID: PMC187823          DOI: 10.1073/pnas.1633771100

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  8 in total

1.  Dependence of thermodynamic efficiency of proton pumps on frequency of oscillatory concentration of ATP.

Authors:  M Schell; K Kundu; J Ross
Journal:  Proc Natl Acad Sci U S A       Date:  1987-01       Impact factor: 11.205

Review 2.  Thermodynamic efficiency in nonlinear biochemical reactions.

Authors:  J Ross; M Schell
Journal:  Annu Rev Biophys Biophys Chem       Date:  1987

3.  Genetic-algorithm selection of a regulatory structure that directs flux in a simple metabolic model.

Authors:  A Gilman; J Ross
Journal:  Biophys J       Date:  1995-10       Impact factor: 4.033

4.  Entrainment and resonance in glycolysis.

Authors:  Y Termonia; J Ross
Journal:  Proc Natl Acad Sci U S A       Date:  1982-05       Impact factor: 11.205

5.  Oscillations and efficiency in glycolysis.

Authors:  P H Richter; J Ross
Journal:  Biophys Chem       Date:  1980-12       Impact factor: 2.352

6.  Oscillations and control features in glycolysis: numerical analysis of a comprehensive model.

Authors:  Y Termonia; J Ross
Journal:  Proc Natl Acad Sci U S A       Date:  1981-05       Impact factor: 11.205

7.  Wave energy and intertidal productivity.

Authors:  E G Leigh; R T Paine; J F Quinn; T H Suchanek
Journal:  Proc Natl Acad Sci U S A       Date:  1987-03       Impact factor: 11.205

8.  Changes in mean concentration, phase shifts, and dissipation in a forced oscillatory reaction.

Authors:  J G Lazar; J Ross
Journal:  Science       Date:  1990-01-12       Impact factor: 47.728

  8 in total
  4 in total

1.  Kinetic laws, phase-phase expansions, renormalization group, and INR calibration.

Authors:  Marcel O Vlad; Alexandru D Corlan; Federico Morán; Rainer Spang; Peter Oefner; John Ross
Journal:  Proc Natl Acad Sci U S A       Date:  2009-04-06       Impact factor: 11.205

2.  Cancer stem cell theory and the warburg effect, two sides of the same coin?

Authors:  Nicola Pacini; Fabio Borziani
Journal:  Int J Mol Sci       Date:  2014-05-19       Impact factor: 5.923

3.  Effect of Indolic-Amide Melatonin on Blood Cell Population: A Biophysical Gaussian Statistical Analysis.

Authors:  Roberto Zivieri; Fabio Borziani; Angela Strazzanti; Angela Fragomeni; Nicola Pacini
Journal:  Molecules       Date:  2018-06-07       Impact factor: 4.411

4.  Prebiotic competition and evolution in self-replicating polynucleotides can explain the properties of DNA/RNA in modern living systems.

Authors:  Hemachander Subramanian; Joel Brown; Robert Gatenby
Journal:  BMC Evol Biol       Date:  2020-06-26       Impact factor: 3.436

  4 in total

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