Literature DB >> 19365729

Cell death discrimination with Raman spectroscopy and support vector machines.

Georgios Pyrgiotakis1, O Erhun Kundakcioglu, Kathryn Finton, Panos M Pardalos, Kevin Powers, Brij M Moudgil.   

Abstract

In the present study, Raman spectroscopy is employed to assess the potential toxicity of chemical substances. Having several advantages compared to other traditional methods, Raman spectroscopy is an ideal solution for investigating cells in their natural environment. In the present work, we combine the power of spectral resolution of Raman with one of the most widely used machine learning techniques. Support vector machines (SVMs) are used in the context of classification on a well established database. The database is constructed on three different classes: healthy cells, Triton X-100 (necrotic death), and etoposide (apoptotic death). SVM classifiers successfully assess the potential effect of the test toxins (Triton X-100, etoposide). The cells that are exposed to heat (45 degrees C) are tested using the classification rules obtained. It is shown that the heat effect results in apoptotic death, which is in agreement with existing literature.

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Year:  2009        PMID: 19365729     DOI: 10.1007/s10439-009-9688-z

Source DB:  PubMed          Journal:  Ann Biomed Eng        ISSN: 0090-6964            Impact factor:   3.934


  7 in total

Review 1.  Cell death goes LIVE: technological advances in real-time tracking of cell death.

Authors:  Joanna Skommer; Zbigniew Darzynkiewicz; Donald Wlodkowic
Journal:  Cell Cycle       Date:  2010-06-15       Impact factor: 4.534

Review 2.  Optical techniques for the noninvasive diagnosis of skin cancer.

Authors:  Mihaela Antonina Calin; Sorin Viorel Parasca; Roxana Savastru; Marian Romeo Calin; Simona Dontu
Journal:  J Cancer Res Clin Oncol       Date:  2013-04-04       Impact factor: 4.553

Review 3.  Raman spectroscopy in biomedicine - non-invasive in vitro analysis of cells and extracellular matrix components in tissues.

Authors:  Eva Brauchle; Katja Schenke-Layland
Journal:  Biotechnol J       Date:  2012-11-19       Impact factor: 4.677

4.  Cu(II) enhances the effect of Alzheimer's amyloid-β peptide on microglial activation.

Authors:  Fengxiang Yu; Ping Gong; Zhuqin Hu; Yu Qiu; Yongyao Cui; Xiaoling Gao; Hongzhuan Chen; Juan Li
Journal:  J Neuroinflammation       Date:  2015-06-24       Impact factor: 8.322

5.  Real-Time Nanoparticle-Cell Interactions in Physiological Media by Atomic Force Microscopy.

Authors:  Georgios Pyrgiotakis; Christoph O Blattmann; Philip Demokritou
Journal:  ACS Sustain Chem Eng       Date:  2014-06-10       Impact factor: 8.198

6.  Lie Group Analysis of the Photo-Induced Fluorescence of Drosophila Oogenesis with the Asymmetrically Localized Gurken Protein.

Authors:  Jen-Cheng Wang; Pei-Yu Wang; Hung-Ing Chen; Kai-Ling Wu; Li-Mei Pai; Tzer-En Nee
Journal:  PLoS One       Date:  2013-06-19       Impact factor: 3.240

7.  Cell death stages in single apoptotic and necrotic cells monitored by Raman microspectroscopy.

Authors:  Eva Brauchle; Sibylle Thude; Sara Y Brucker; Katja Schenke-Layland
Journal:  Sci Rep       Date:  2014-04-15       Impact factor: 4.379

  7 in total

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