Literature DB >> 19364139

Detecting ricin: sensitive luminescent assay for ricin A-chain ribosome depurination kinetics.

Matthew B Sturm1, Vern L Schramm.   

Abstract

Ricin is a family member of the lethal ribosome-inactivating proteins (RIP) found in plants. Ricin toxin A-chain (RTA) from castor beans catalyzes the hydrolytic depurination of a single base from a GAGA tetraloop of eukaryotic rRNA to release a single adenine from the sarcin-ricin loop (SRL). Protein synthesis is inhibited by loss of the elongation factor binding site resulting in cell death. We report a sensitive coupled assay for the measurement of adenine released from ribosomes or small stem-loop RNAs by RTA catalysis. Adenine phosphoribosyl transferase (APRTase) and pyruvate orthophosphate dikinase (PPDK) convert adenine to ATP for quantitation by firefly luciferase. The resulting AMP is cycled to ATP to give sustained luminescence proportional to adenine concentration. Subpicomole adenine quantitation permits the action of RTA on eukaryotic ribosomes to be followed in continuous, high-throughput assays. Facile analysis of RIP catalytic activity will have applications in plant toxin detection, inhibitor screens, mechanistic analysis of depurinating agents on oligonucleotides and intact ribosomes, and in cancer immunochemotherapy. Kinetic analysis of the catalytic action of RTA on rabbit reticulocyte 80S ribosomes establishes a catalytic efficiency of 2.6 x 10(8) M(-1) s(-1), a diffusion limited reaction indicating catalytic perfection even with large reactants.

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Year:  2009        PMID: 19364139      PMCID: PMC2692192          DOI: 10.1021/ac8026433

Source DB:  PubMed          Journal:  Anal Chem        ISSN: 0003-2700            Impact factor:   6.986


  26 in total

1.  Ribosome-mediated folding of partially unfolded ricin A-chain.

Authors:  R H Argent; A M Parrott; P J Day; L M Roberts; P G Stockley; J M Lord; S E Radford
Journal:  J Biol Chem       Date:  2000-03-31       Impact factor: 5.157

Review 2.  Superefficient enzymes.

Authors:  M E Stroppolo; M Falconi; A M Caccuri; A Desideri
Journal:  Cell Mol Life Sci       Date:  2001-09       Impact factor: 9.261

3.  Ribosome inactivation by the toxic lectins abrin and ricin. Kinetics of the enzymic activity of the toxin A-chains.

Authors:  S Olsnes; C Fernandez-Puentes; L Carrasco; D Vazquez
Journal:  Eur J Biochem       Date:  1975-12-01

4.  Enzymatic activity of toxic and non-toxic type 2 ribosome-inactivating proteins.

Authors:  Luigi Barbieri; Marialibera Ciani; Tomás Girbés; Wang-Yi Liu; Els J M Van Damme; Willy J Peumans; Fiorenzo Stirpe
Journal:  FEBS Lett       Date:  2004-04-09       Impact factor: 4.124

5.  A colorimetric assay for the quantitation of free adenine applied to determine the enzymatic activity of ribosome-inactivating proteins.

Authors:  Iring Heisler; Jutta Keller; Rudolf Tauber; Mark Sutherland; Hendrik Fuchs
Journal:  Anal Biochem       Date:  2002-03-01       Impact factor: 3.365

6.  Investigation of the catalytic site within the ATP-grasp domain of Clostridium symbiosum pyruvate phosphate dikinase.

Authors:  D Ye; M Wei; M McGuire; K Huang; G Kapadia; O Herzberg; B M Martin; D Dunaway-Mariano
Journal:  J Biol Chem       Date:  2001-07-23       Impact factor: 5.157

7.  Characterization of two plant lectins from Ricinus communis and their quantitative interaction with a murine lymphoma.

Authors:  G L Nicolson; J Blaustein; M E Etzler
Journal:  Biochemistry       Date:  1974-01-01       Impact factor: 3.162

8.  Dependence of ricin toxicity on translocation of the toxin A-chain from the endoplasmic reticulum to the cytosol.

Authors:  J Wesche; A Rapak; S Olsnes
Journal:  J Biol Chem       Date:  1999-11-26       Impact factor: 5.157

9.  Structural analysis of adenine phosphoribosyltransferase from Saccharomyces cerevisiae.

Authors:  W Shi; K S Tanaka; T R Crother; M W Taylor; S C Almo; V L Schramm
Journal:  Biochemistry       Date:  2001-09-11       Impact factor: 3.162

10.  Ricin A-chain substrate specificity in RNA, DNA, and hybrid stem-loop structures.

Authors:  Tim K Amukele; Vern L Schramm
Journal:  Biochemistry       Date:  2004-05-04       Impact factor: 3.162

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  37 in total

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Authors:  Artem V Domashevskiy; Hiroshi Miyoshi; Dixie J Goss
Journal:  J Biol Chem       Date:  2012-07-06       Impact factor: 5.157

2.  Development of a quantitative RT-PCR assay to examine the kinetics of ribosome depurination by ribosome inactivating proteins using Saccharomyces cerevisiae as a model.

Authors:  Michael Pierce; Jennifer Nielsen Kahn; Jiachi Chiou; Nilgun E Tumer
Journal:  RNA       Date:  2010-11-23       Impact factor: 4.942

3.  Structural insights into the neutralization mechanism of monoclonal antibody 6C2 against ricin.

Authors:  Yuwei Zhu; Jianxin Dai; Tiancheng Zhang; Xu Li; Pengfei Fang; Huajing Wang; Yongliang Jiang; Xiaojie Yu; Tian Xia; Liwen Niu; Yajun Guo; Maikun Teng
Journal:  J Biol Chem       Date:  2013-07-12       Impact factor: 5.157

4.  Transition state analogues in structures of ricin and saporin ribosome-inactivating proteins.

Authors:  Meng-Chiao Ho; Matthew B Sturm; Steven C Almo; Vern L Schramm
Journal:  Proc Natl Acad Sci U S A       Date:  2009-11-17       Impact factor: 11.205

5.  Identification of a novel functional domain of ricin responsible for its potent toxicity.

Authors:  Jianxing Dai; Lei Zhao; Haiou Yang; Huaizu Guo; Kexing Fan; Huaqing Wang; Weizhu Qian; Dapeng Zhang; Bohua Li; Hao Wang; Yajun Guo
Journal:  J Biol Chem       Date:  2011-02-08       Impact factor: 5.157

6.  The A1 Subunit of Shiga Toxin 2 Has Higher Affinity for Ribosomes and Higher Catalytic Activity than the A1 Subunit of Shiga Toxin 1.

Authors:  Debaleena Basu; Xiao-Ping Li; Jennifer N Kahn; Kerrie L May; Peter C Kahn; Nilgun E Tumer
Journal:  Infect Immun       Date:  2015-10-19       Impact factor: 3.441

7.  Structural and biochemical characterization of Chlamydia trachomatis hypothetical protein CT263 supports that menaquinone synthesis occurs through the futalosine pathway.

Authors:  Michael L Barta; Keisha Thomas; Hongling Yuan; Scott Lovell; Kevin P Battaile; Vern L Schramm; P Scott Hefty
Journal:  J Biol Chem       Date:  2014-09-24       Impact factor: 5.157

8.  Formulating a fluorogenic assay to evaluate S-adenosyl-L-methionine analogues as protein methyltransferase cofactors.

Authors:  Rui Wang; Glorymar Ibáñez; Kabirul Islam; Weihong Zheng; Gil Blum; Caitlin Sengelaub; Minkui Luo
Journal:  Mol Biosyst       Date:  2011-08-24

9.  The P1/P2 proteins of the human ribosomal stalk are required for ribosome binding and depurination by ricin in human cells.

Authors:  Kerrie L May; Xiao-Ping Li; Francisco Martínez-Azorín; Juan P G Ballesta; Przemysław Grela; Marek Tchórzewski; Nilgun E Tumer
Journal:  FEBS J       Date:  2012-09-11       Impact factor: 5.542

10.  Transition state analogues rescue ribosomes from saporin-L1 ribosome inactivating protein.

Authors:  Matthew B Sturm; Peter C Tyler; Gary B Evans; Vern L Schramm
Journal:  Biochemistry       Date:  2009-10-20       Impact factor: 3.162

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