Literature DB >> 25253688

Structural and biochemical characterization of Chlamydia trachomatis hypothetical protein CT263 supports that menaquinone synthesis occurs through the futalosine pathway.

Michael L Barta1, Keisha Thomas2, Hongling Yuan2, Scott Lovell3, Kevin P Battaile4, Vern L Schramm2, P Scott Hefty5.   

Abstract

The obligate intracellular human pathogen Chlamydia trachomatis is the etiological agent of blinding trachoma and sexually transmitted disease. Genomic sequencing of Chlamydia indicated this medically important bacterium was not exclusively dependent on the host cell for energy. In order for the electron transport chain to function, electron shuttling between membrane-embedded complexes requires lipid-soluble quinones (e.g. menaquionone or ubiquinone). The sources or biosynthetic pathways required to obtain these electron carriers within C. trachomatis are poorly understood. The 1.58Å crystal structure of C. trachomatis hypothetical protein CT263 presented here supports a role in quinone biosynthesis. Although CT263 lacks sequence-based functional annotation, the crystal structure of CT263 displays striking structural similarity to 5'-methylthioadenosine nucleosidase (MTAN) enzymes. Although CT263 lacks the active site-associated dimer interface found in prototypical MTANs, co-crystal structures with product (adenine) or substrate (5'-methylthioadenosine) indicate that the canonical active site residues are conserved. Enzymatic characterization of CT263 indicates that the futalosine pathway intermediate 6-amino-6-deoxyfutalosine (kcat/Km = 1.8 × 10(3) M(-1) s(-1)), but not the prototypical MTAN substrates (e.g. S-adenosylhomocysteine and 5'-methylthioadenosine), is hydrolyzed. Bioinformatic analyses of the chlamydial proteome also support the futalosine pathway toward the synthesis of menaquinone in Chlamydiaceae. This report provides the first experimental support for quinone synthesis in Chlamydia. Menaquinone synthesis provides another target for agents to combat C. trachomatis infection.
© 2014 by The American Society for Biochemistry and Molecular Biology, Inc.

Entities:  

Keywords:  Chlamydia; Crystallography; Enzyme Kinetics; Quinone; Respiration

Mesh:

Substances:

Year:  2014        PMID: 25253688      PMCID: PMC4231696          DOI: 10.1074/jbc.M114.594325

Source DB:  PubMed          Journal:  J Biol Chem        ISSN: 0021-9258            Impact factor:   5.157


  67 in total

1.  Scoring function for automated assessment of protein structure template quality.

Authors:  Yang Zhang; Jeffrey Skolnick
Journal:  Proteins       Date:  2004-12-01

2.  Theoretical analysis of the effects of reversible dimerization in size exclusion chromatography.

Authors:  Chi-Ming Yu; Sungyong Mun; Nien-Hwa Linda Wang
Journal:  J Chromatogr A       Date:  2006-08-02       Impact factor: 4.759

3.  Crystal structures of the Helicobacter pylori MTAN enzyme reveal specific interactions between S-adenosylhomocysteine and the 5'-alkylthio binding subsite.

Authors:  Vidhi Mishra; Donald R Ronning
Journal:  Biochemistry       Date:  2012-11-20       Impact factor: 3.162

4.  Methylthioadenosine, a potent inhibitor of spermine synthase from bovine brain.

Authors:  R L Pajula; A Raina
Journal:  FEBS Lett       Date:  1979-03-15       Impact factor: 4.124

5.  Structure of Staphylococcus aureus 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase.

Authors:  Karen K W Siu; Jeffrey E Lee; G David Smith; Cathy Horvatin-Mrakovcic; P Lynne Howell
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2008-04-30

6.  Features and development of Coot.

Authors:  P Emsley; B Lohkamp; W G Scott; K Cowtan
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2010-03-24

7.  Salmonella enterica MTAN at 1.36 Å resolution: a structure-based design of tailored transition state analogs.

Authors:  Antti M Haapalainen; Keisha Thomas; Peter C Tyler; Gary B Evans; Steven C Almo; Vern L Schramm
Journal:  Structure       Date:  2013-05-16       Impact factor: 5.006

Review 8.  Persistent chlamydiae: from cell culture to a paradigm for chlamydial pathogenesis.

Authors:  W L Beatty; R P Morrison; G I Byrne
Journal:  Microbiol Rev       Date:  1994-12

9.  Characterization of in vitro chlamydial cultures in low-oxygen atmospheres.

Authors:  Nicolai Juul; Helene Jensen; Malene Hvid; Gunna Christiansen; Svend Birkelund
Journal:  J Bacteriol       Date:  2007-07-13       Impact factor: 3.490

Review 10.  Scaling and assessment of data quality.

Authors:  Philip Evans
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2005-12-14
View more
  10 in total

1.  Dynamic energy dependency of Chlamydia trachomatis on host cell metabolism during intracellular growth: Role of sodium-based energetics in chlamydial ATP generation.

Authors:  Pingdong Liang; Mónica Rosas-Lemus; Dhwani Patel; Xuan Fang; Karina Tuz; Oscar Juárez
Journal:  J Biol Chem       Date:  2017-11-09       Impact factor: 5.157

2.  Computational modeling of TC0583 as a putative component of the Chlamydia muridarum V-type ATP synthase complex and assessment of its protective capabilities as a vaccine antigen.

Authors:  Delia F Tifrea; Michael L Barta; Sukumar Pal; P Scott Hefty; Luis M de la Maza
Journal:  Microbes Infect       Date:  2015-12-17       Impact factor: 2.700

Review 3.  Enzymatic Transition States and Drug Design.

Authors:  Vern L Schramm
Journal:  Chem Rev       Date:  2018-10-18       Impact factor: 60.622

4.  Genomic Analysis of the Human Gut Microbiome Suggests Novel Enzymes Involved in Quinone Biosynthesis.

Authors:  Dmitry A Ravcheev; Ines Thiele
Journal:  Front Microbiol       Date:  2016-02-09       Impact factor: 5.640

5.  Characterization and engineering of the biosynthesis gene cluster for antitumor macrolides PM100117 and PM100118 from a marine actinobacteria: generation of a novel improved derivative.

Authors:  Raúl García Salcedo; Carlos Olano; Cristina Gómez; Rogelio Fernández; Alfredo F Braña; Carmen Méndez; Fernando de la Calle; José A Salas
Journal:  Microb Cell Fact       Date:  2016-02-22       Impact factor: 5.328

6.  In silico functional elucidation of uncharacterized proteins of Chlamydia abortus strain LLG.

Authors:  Gagandeep Singh; Dixit Sharma; Vikram Singh; Jyoti Rani; Francessco Marotta; Manoj Kumar; Gorakh Mal; Birbal Singh
Journal:  Future Sci OA       Date:  2017-01-24

7.  Environmental Metagenomic Assemblies Reveal Seven New Highly Divergent Chlamydial Lineages and Hallmarks of a Conserved Intracellular Lifestyle.

Authors:  Trestan Pillonel; Claire Bertelli; Gilbert Greub
Journal:  Front Microbiol       Date:  2018-02-20       Impact factor: 5.640

8.  Questing functions and structures of hypothetical proteins from Campylobacter jejuni: a computer-aided approach.

Authors:  Md Amran Gazi; Sultan Mahmud; Shah Mohammad Fahim; Md Rezaul Islam; Subhasish Das; Mustafa Mahfuz; Tahmeed Ahmed
Journal:  Biosci Rep       Date:  2020-06-26       Impact factor: 3.840

9.  In silico functional annotation of hypothetical proteins from the Bacillus paralicheniformis strain Bac84 reveals proteins with biotechnological potentials and adaptational functions to extreme environments.

Authors:  Md Atikur Rahman; Uzma Habiba Heme; Md Anowar Khasru Parvez
Journal:  PLoS One       Date:  2022-10-13       Impact factor: 3.752

10.  Aminofutalosine Deaminase in the Menaquinone Pathway of Helicobacter pylori.

Authors:  Mu Feng; Rajesh K Harijan; Lawrence D Harris; Peter C Tyler; Richard F G Fröhlich; Morais Brown; Vern L Schramm
Journal:  Biochemistry       Date:  2021-06-02       Impact factor: 3.321

  10 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.