Literature DB >> 19363788

Gene expression during the oocyte-to-embryo transition in mammals.

Alexei V Evsikov1, Caralina Marín de Evsikova.   

Abstract

The seminal question in modern developmental biology is the origins of new life arising from the unification of sperm and egg. The roots of this question begin from 19th to 20th century embryologists studying fertilization and embryogenesis. Although the revolution of molecular biology has yielded significant insight into the complexity of this process, the overall orchestration of genes, molecules, and cells is still not fully formed. Early mammalian development, specifically the oocyte-to-embryo transition, is essentially under "maternal command" from factors deposited in the cytoplasm during oocyte growth, independent of de novo transcription from the nascent embryo. Many of the advances in understanding this developmental period occurred in tandem with application of new methods and techniques from molecular biology, from protein electrophoresis to sequencing and assemblies of whole genomes. From this bed of knowledge, it appears that precise control of mRNA translation is a key regulator coordinating the molecular and cellular events occurring during oocyte-to-embryo transition. Notably, oocyte transcriptomes share, yet retain some uniqueness, common genetic motifs among all chordates. The common genetic motifs typically define fundamental processes critical for cellular maintenance, whereas the unique genetic features may be a source of variation and a substrate for sexual selection, genetic drift, or gene flow. One purpose for this complex interplay among genes, proteins, and cells may allow for evolution to transform and act upon the underlying processes, at molecular, structural and organismal levels, to increase diversity, which is the ultimate goal of sexual reproduction.

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Year:  2009        PMID: 19363788      PMCID: PMC2974443          DOI: 10.1002/mrd.21038

Source DB:  PubMed          Journal:  Mol Reprod Dev        ISSN: 1040-452X            Impact factor:   2.609


  179 in total

1.  Identification of a C-rich element as a novel cytoplasmic polyadenylation element in Xenopus embryos.

Authors:  L Paillard; D Maniey; P Lachaume; V Legagneux; H B Osborne
Journal:  Mech Dev       Date:  2000-05       Impact factor: 1.882

2.  Oolemmal proteomics.

Authors:  Scott A Coonrod; Paul W Wright; John C Herr
Journal:  J Reprod Immunol       Date:  2002-01       Impact factor: 4.054

3.  Systems biology of the 2-cell mouse embryo.

Authors:  A V Evsikov; W N de Vries; A E Peaston; E E Radford; K S Fancher; F H Chen; J A Blake; C J Bult; K E Latham; D Solter; B B Knowles
Journal:  Cytogenet Genome Res       Date:  2004       Impact factor: 1.636

4.  Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences.

Authors:  Robert L Strausberg; Elise A Feingold; Lynette H Grouse; Jeffery G Derge; Richard D Klausner; Francis S Collins; Lukas Wagner; Carolyn M Shenmen; Gregory D Schuler; Stephen F Altschul; Barry Zeeberg; Kenneth H Buetow; Carl F Schaefer; Narayan K Bhat; Ralph F Hopkins; Heather Jordan; Troy Moore; Steve I Max; Jun Wang; Florence Hsieh; Luda Diatchenko; Kate Marusina; Andrew A Farmer; Gerald M Rubin; Ling Hong; Mark Stapleton; M Bento Soares; Maria F Bonaldo; Tom L Casavant; Todd E Scheetz; Michael J Brownstein; Ted B Usdin; Shiraki Toshiyuki; Piero Carninci; Christa Prange; Sam S Raha; Naomi A Loquellano; Garrick J Peters; Rick D Abramson; Sara J Mullahy; Stephanie A Bosak; Paul J McEwan; Kevin J McKernan; Joel A Malek; Preethi H Gunaratne; Stephen Richards; Kim C Worley; Sarah Hale; Angela M Garcia; Laura J Gay; Stephen W Hulyk; Debbie K Villalon; Donna M Muzny; Erica J Sodergren; Xiuhua Lu; Richard A Gibbs; Jessica Fahey; Erin Helton; Mark Ketteman; Anuradha Madan; Stephanie Rodrigues; Amy Sanchez; Michelle Whiting; Anup Madan; Alice C Young; Yuriy Shevchenko; Gerard G Bouffard; Robert W Blakesley; Jeffrey W Touchman; Eric D Green; Mark C Dickson; Alex C Rodriguez; Jane Grimwood; Jeremy Schmutz; Richard M Myers; Yaron S N Butterfield; Martin I Krzywinski; Ursula Skalska; Duane E Smailus; Angelique Schnerch; Jacqueline E Schein; Steven J M Jones; Marco A Marra
Journal:  Proc Natl Acad Sci U S A       Date:  2002-12-11       Impact factor: 11.205

5.  Development of preimplantation rabbit embryos in vivo and in vitro.

Authors:  J Van Blerkom; C Manes
Journal:  Dev Biol       Date:  1974-09       Impact factor: 3.582

6.  High-efficiency cloning of full-length cDNA.

Authors:  H Okayama; P Berg
Journal:  Mol Cell Biol       Date:  1982-02       Impact factor: 4.272

7.  Synthesis of zona pellucida proteins by denuded and follicle-enclosed mouse oocytes during culture in vitro.

Authors:  J D Bleil; P M Wassarman
Journal:  Proc Natl Acad Sci U S A       Date:  1980-02       Impact factor: 11.205

8.  Role for PADI6 and the cytoplasmic lattices in ribosomal storage in oocytes and translational control in the early mouse embryo.

Authors:  Piraye Yurttas; Alejandra M Vitale; Robert J Fitzhenry; Leona Cohen-Gould; Wenzhu Wu; Jan A Gossen; Scott A Coonrod
Journal:  Development       Date:  2008-07-03       Impact factor: 6.868

9.  Quantitative analysis of protein synthesis in mouse embryos. I. Extensive reprogramming at the one- and two-cell stages.

Authors:  K E Latham; J I Garrels; C Chang; D Solter
Journal:  Development       Date:  1991-08       Impact factor: 6.868

10.  The transcriptional landscape of the mammalian genome.

Authors:  P Carninci; T Kasukawa; S Katayama; J Gough; M C Frith; N Maeda; R Oyama; T Ravasi; B Lenhard; C Wells; R Kodzius; K Shimokawa; V B Bajic; S E Brenner; S Batalov; A R R Forrest; M Zavolan; M J Davis; L G Wilming; V Aidinis; J E Allen; A Ambesi-Impiombato; R Apweiler; R N Aturaliya; T L Bailey; M Bansal; L Baxter; K W Beisel; T Bersano; H Bono; A M Chalk; K P Chiu; V Choudhary; A Christoffels; D R Clutterbuck; M L Crowe; E Dalla; B P Dalrymple; B de Bono; G Della Gatta; D di Bernardo; T Down; P Engstrom; M Fagiolini; G Faulkner; C F Fletcher; T Fukushima; M Furuno; S Futaki; M Gariboldi; P Georgii-Hemming; T R Gingeras; T Gojobori; R E Green; S Gustincich; M Harbers; Y Hayashi; T K Hensch; N Hirokawa; D Hill; L Huminiecki; M Iacono; K Ikeo; A Iwama; T Ishikawa; M Jakt; A Kanapin; M Katoh; Y Kawasawa; J Kelso; H Kitamura; H Kitano; G Kollias; S P T Krishnan; A Kruger; S K Kummerfeld; I V Kurochkin; L F Lareau; D Lazarevic; L Lipovich; J Liu; S Liuni; S McWilliam; M Madan Babu; M Madera; L Marchionni; H Matsuda; S Matsuzawa; H Miki; F Mignone; S Miyake; K Morris; S Mottagui-Tabar; N Mulder; N Nakano; H Nakauchi; P Ng; R Nilsson; S Nishiguchi; S Nishikawa; F Nori; O Ohara; Y Okazaki; V Orlando; K C Pang; W J Pavan; G Pavesi; G Pesole; N Petrovsky; S Piazza; J Reed; J F Reid; B Z Ring; M Ringwald; B Rost; Y Ruan; S L Salzberg; A Sandelin; C Schneider; C Schönbach; K Sekiguchi; C A M Semple; S Seno; L Sessa; Y Sheng; Y Shibata; H Shimada; K Shimada; D Silva; B Sinclair; S Sperling; E Stupka; K Sugiura; R Sultana; Y Takenaka; K Taki; K Tammoja; S L Tan; S Tang; M S Taylor; J Tegner; S A Teichmann; H R Ueda; E van Nimwegen; R Verardo; C L Wei; K Yagi; H Yamanishi; E Zabarovsky; S Zhu; A Zimmer; W Hide; C Bult; S M Grimmond; R D Teasdale; E T Liu; V Brusic; J Quackenbush; C Wahlestedt; J S Mattick; D A Hume; C Kai; D Sasaki; Y Tomaru; S Fukuda; M Kanamori-Katayama; M Suzuki; J Aoki; T Arakawa; J Iida; K Imamura; M Itoh; T Kato; H Kawaji; N Kawagashira; T Kawashima; M Kojima; S Kondo; H Konno; K Nakano; N Ninomiya; T Nishio; M Okada; C Plessy; K Shibata; T Shiraki; S Suzuki; M Tagami; K Waki; A Watahiki; Y Okamura-Oho; H Suzuki; J Kawai; Y Hayashizaki
Journal:  Science       Date:  2005-09-02       Impact factor: 47.728

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  24 in total

Review 1.  EGG molecules couple the oocyte-to-embryo transition with cell cycle progression.

Authors:  Jean M Parry; Andrew Singson
Journal:  Results Probl Cell Differ       Date:  2011

2.  The transcriptome of a human polar body accurately reflects its sibling oocyte.

Authors:  Adrian Reich; Peter Klatsky; Sandra Carson; Gary Wessel
Journal:  J Biol Chem       Date:  2011-09-27       Impact factor: 5.157

Review 3.  Competition between target sites of regulators shapes post-transcriptional gene regulation.

Authors:  Marvin Jens; Nikolaus Rajewsky
Journal:  Nat Rev Genet       Date:  2014-12-09       Impact factor: 53.242

4.  Subcortical maternal complex (SCMC) expression during folliculogenesis is affected by oocyte donor age in sheep.

Authors:  D Bebbere; A Abazari-Kia; S Nieddu; B Melis Murgia; D F Albertini; S Ledda
Journal:  J Assist Reprod Genet       Date:  2020-07-01       Impact factor: 3.412

5.  Global characterization of the oocyte-to-embryo transition in Caenorhabditis elegans uncovers a novel mRNA clearance mechanism.

Authors:  Marlon Stoeckius; Dominic Grün; Marieluise Kirchner; Salah Ayoub; Francesca Torti; Fabio Piano; Margareta Herzog; Matthias Selbach; Nikolaus Rajewsky
Journal:  EMBO J       Date:  2014-06-23       Impact factor: 11.598

6.  Voltage sensitive phosphoinositide phosphatases of Xenopus: their tissue distribution and voltage dependence.

Authors:  William J Ratzan; Alexei V Evsikov; Yasushi Okamura; Laurinda A Jaffe
Journal:  J Cell Physiol       Date:  2011-11       Impact factor: 6.384

7.  Transcriptome profiling of embryonic development rate in rainbow trout advanced backcross introgression lines.

Authors:  Peng Xu; Lauren M McIntyre; Julie Scardina; Paul A Wheeler; Gary H Thorgaard; Krista M Nichols
Journal:  Mar Biotechnol (NY)       Date:  2010-03-30       Impact factor: 3.619

8.  Normalization of RNA-sequencing data from samples with varying mRNA levels.

Authors:  Håvard Aanes; Cecilia Winata; Lars F Moen; Olga Østrup; Sinnakaruppan Mathavan; Philippe Collas; Torbjørn Rognes; Peter Aleström
Journal:  PLoS One       Date:  2014-02-25       Impact factor: 3.240

9.  KHDC1B is a novel CPEB binding partner specifically expressed in mouse oocytes and early embryos.

Authors:  Congli Cai; Keiko Tamai; Kathleen Molyneaux
Journal:  Mol Biol Cell       Date:  2010-07-28       Impact factor: 4.138

10.  Aging of Xenopus tropicalis eggs leads to deadenylation of a specific set of maternal mRNAs and loss of developmental potential.

Authors:  Anna Kosubek; Ludger Klein-Hitpass; Katrin Rademacher; Bernhard Horsthemke; Gerhart U Ryffel
Journal:  PLoS One       Date:  2010-10-22       Impact factor: 3.240

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