Literature DB >> 19359577

Protein dynamism and evolvability.

Nobuhiko Tokuriki1, Dan S Tawfik.   

Abstract

The traditional view that proteins possess absolute functional specificity and a single, fixed structure conflicts with their marked ability to adapt and evolve new functions and structures. We consider an alternative, "avant-garde view" in which proteins are conformationally dynamic and exhibit functional promiscuity. We surmise that these properties are the foundation stones of protein evolvability; they facilitate the divergence of new functions within existing folds and the evolution of entirely new folds. Packing modes of proteins also affect their evolvability, and poorly packed, disordered, and conformationally diverse proteins may exhibit high evolvability. This dynamic view of protein structure, function, and evolvability is extrapolated to describe hypothetical scenarios for the evolution of the early proteins and future research directions in the area of protein dynamism and evolution.

Entities:  

Mesh:

Substances:

Year:  2009        PMID: 19359577     DOI: 10.1126/science.1169375

Source DB:  PubMed          Journal:  Science        ISSN: 0036-8075            Impact factor:   47.728


  291 in total

1.  Intra-chain 3D segment swapping spawns the evolution of new multidomain protein architectures.

Authors:  András Szilágyi; Yang Zhang; Péter Závodszky
Journal:  J Mol Biol       Date:  2011-11-04       Impact factor: 5.469

Review 2.  The role of robustness in phenotypic adaptation and innovation.

Authors:  Andreas Wagner
Journal:  Proc Biol Sci       Date:  2012-01-04       Impact factor: 5.349

3.  Taking Ockham's razor to enzyme dynamics and catalysis.

Authors:  David R Glowacki; Jeremy N Harvey; Adrian J Mulholland
Journal:  Nat Chem       Date:  2012-01-29       Impact factor: 24.427

4.  Conversion of the enzyme guanylate kinase into a mitotic-spindle orienting protein by a single mutation that inhibits GMP-induced closing.

Authors:  Christopher A Johnston; Dustin S Whitney; Brian F Volkman; Chris Q Doe; Kenneth E Prehoda
Journal:  Proc Natl Acad Sci U S A       Date:  2011-10-11       Impact factor: 11.205

5.  Ensemble perspective for catalytic promiscuity: calorimetric analysis of the active site conformational landscape of a detoxification enzyme.

Authors:  Matthew T Honaker; Mauro Acchione; John P Sumida; William M Atkins
Journal:  J Biol Chem       Date:  2011-10-14       Impact factor: 5.157

6.  Bridging the gaps in design methodologies by evolutionary optimization of the stability and proficiency of designed Kemp eliminase KE59.

Authors:  Olga Khersonsky; Gert Kiss; Daniela Röthlisberger; Orly Dym; Shira Albeck; Kendall N Houk; David Baker; Dan S Tawfik
Journal:  Proc Natl Acad Sci U S A       Date:  2012-06-08       Impact factor: 11.205

7.  A novel minicollagen gene links cnidarians and myxozoans.

Authors:  Jason W Holland; Beth Okamura; Hanna Hartikainen; Chris J Secombes
Journal:  Proc Biol Sci       Date:  2010-09-01       Impact factor: 5.349

8.  Mutational and fitness landscapes of an RNA virus revealed through population sequencing.

Authors:  Ashley Acevedo; Leonid Brodsky; Raul Andino
Journal:  Nature       Date:  2013-11-27       Impact factor: 49.962

9.  Reflections on the catalytic power of a TIM-barrel.

Authors:  John P Richard; Xiang Zhai; M Merced Malabanan
Journal:  Bioorg Chem       Date:  2014-07-11       Impact factor: 5.275

10.  Structured States of Disordered Proteins from Genomic Sequences.

Authors:  Agnes Toth-Petroczy; Perry Palmedo; John Ingraham; Thomas A Hopf; Bonnie Berger; Chris Sander; Debora S Marks
Journal:  Cell       Date:  2016-09-22       Impact factor: 41.582

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.