Literature DB >> 19356974

New fluorescence microscopy methods for microbiology: sharper, faster, and quantitative.

Zemer Gitai1.   

Abstract

In addition to the inherent interest stemming from their ecological and human health impacts, microbes have many advantages as model organisms, including ease of growth and manipulation and relatively simple genomes. However, the imaging of bacteria via light microscopy has been limited by their small sizes. Recent advances in fluorescence microscopy that allow imaging of structures at extremely high resolutions are thus of particular interest to the modern microbiologist. In addition, advances in high-throughput microscopy and quantitative image analysis are enabling cellular imaging to finally take advantage of the full power of bacterial numbers and ease of manipulation. These technical developments are ushering in a new era of using fluorescence microscopy to understand bacterial systems in a detailed, comprehensive, and quantitative manner.

Entities:  

Mesh:

Year:  2009        PMID: 19356974      PMCID: PMC2741158          DOI: 10.1016/j.mib.2009.03.001

Source DB:  PubMed          Journal:  Curr Opin Microbiol        ISSN: 1369-5274            Impact factor:   7.934


  49 in total

Review 1.  Modern laser scanning microscopy in biology, biotechnology and medicine.

Authors:  Karl-Jürgen Halbhuber; Karsten König
Journal:  Ann Anat       Date:  2003-01       Impact factor: 2.698

2.  Chemosensing in Escherichia coli: two regimes of two-state receptors.

Authors:  Juan E Keymer; Robert G Endres; Monica Skoge; Yigal Meir; Ned S Wingreen
Journal:  Proc Natl Acad Sci U S A       Date:  2006-01-30       Impact factor: 11.205

3.  Video-rate far-field optical nanoscopy dissects synaptic vesicle movement.

Authors:  Volker Westphal; Silvio O Rizzoli; Marcel A Lauterbach; Dirk Kamin; Reinhard Jahn; Stefan W Hell
Journal:  Science       Date:  2008-02-21       Impact factor: 47.728

4.  High-density mapping of single-molecule trajectories with photoactivated localization microscopy.

Authors:  Suliana Manley; Jennifer M Gillette; George H Patterson; Hari Shroff; Harald F Hess; Eric Betzig; Jennifer Lippincott-Schwartz
Journal:  Nat Methods       Date:  2008-01-13       Impact factor: 28.547

Review 5.  Spatial complexity and control of a bacterial cell cycle.

Authors:  Justine Collier; Lucy Shapiro
Journal:  Curr Opin Biotechnol       Date:  2007-08-20       Impact factor: 9.740

6.  Interferometric fluorescent super-resolution microscopy resolves 3D cellular ultrastructure.

Authors:  Gleb Shtengel; James A Galbraith; Catherine G Galbraith; Jennifer Lippincott-Schwartz; Jennifer M Gillette; Suliana Manley; Rachid Sougrat; Clare M Waterman; Pakorn Kanchanawong; Michael W Davidson; Richard D Fetter; Harald F Hess
Journal:  Proc Natl Acad Sci U S A       Date:  2009-02-06       Impact factor: 11.205

7.  Condensation of FtsZ filaments can drive bacterial cell division.

Authors:  Ganhui Lan; Brian R Daniels; Terrence M Dobrowsky; Denis Wirtz; Sean X Sun
Journal:  Proc Natl Acad Sci U S A       Date:  2008-12-30       Impact factor: 11.205

8.  Comparison of quantitative methods for cell-shape analysis.

Authors:  Z Pincus; J A Theriot
Journal:  J Microsc       Date:  2007-08       Impact factor: 1.758

9.  ORFeome cloning and global analysis of protein localization in the fission yeast Schizosaccharomyces pombe.

Authors:  Akihisa Matsuyama; Ritsuko Arai; Yoko Yashiroda; Atsuko Shirai; Ayako Kamata; Shigeko Sekido; Yumiko Kobayashi; Atsushi Hashimoto; Makiko Hamamoto; Yasushi Hiraoka; Sueharu Horinouchi; Minoru Yoshida
Journal:  Nat Biotechnol       Date:  2006-06-25       Impact factor: 54.908

10.  Photoactivatable mCherry for high-resolution two-color fluorescence microscopy.

Authors:  Fedor V Subach; George H Patterson; Suliana Manley; Jennifer M Gillette; Jennifer Lippincott-Schwartz; Vladislav V Verkhusha
Journal:  Nat Methods       Date:  2009-01-25       Impact factor: 28.547

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  13 in total

1.  A distance-weighted interaction map reveals a previously uncharacterized layer of the Bacillus subtilis spore coat.

Authors:  Peter T McKenney; Adam Driks; Haig A Eskandarian; Paul Grabowski; Jonathan Guberman; Katherine H Wang; Zemer Gitai; Patrick Eichenberger
Journal:  Curr Biol       Date:  2010-05-06       Impact factor: 10.834

2.  Physical model of protein cluster positioning in growing bacteria.

Authors:  Vaibhav Wasnik; Hui Wang; Ned S Wingreen; Ranjan Mukhopadhyay
Journal:  New J Phys       Date:  2017-10-11       Impact factor: 3.729

3.  BacM, an N-terminally processed bactofilin of Myxococcus xanthus, is crucial for proper cell shape.

Authors:  Matthias K Koch; Colleen A McHugh; Egbert Hoiczyk
Journal:  Mol Microbiol       Date:  2011-04-04       Impact factor: 3.501

Review 4.  Image analysis in fluorescence microscopy: bacterial dynamics as a case study.

Authors:  Sven van Teeffelen; Joshua W Shaevitz; Zemer Gitai
Journal:  Bioessays       Date:  2012-03-13       Impact factor: 4.345

5.  Omnipose: a high-precision morphology-independent solution for bacterial cell segmentation.

Authors:  Kevin J Cutler; Carsen Stringer; Teresa W Lo; Luca Rappez; Nicholas Stroustrup; S Brook Peterson; Paul A Wiggins; Joseph D Mougous
Journal:  Nat Methods       Date:  2022-10-17       Impact factor: 47.990

6.  Small cells--big future.

Authors:  Bonnie L Bassler
Journal:  Mol Biol Cell       Date:  2010-11-15       Impact factor: 4.138

Review 7.  Counting protein molecules using quantitative fluorescence microscopy.

Authors:  Valerie C Coffman; Jian-Qiu Wu
Journal:  Trends Biochem Sci       Date:  2012-09-02       Impact factor: 13.807

Review 8.  Functioning nanomachines seen in real-time in living bacteria using single-molecule and super-resolution fluorescence imaging.

Authors:  Sheng-Wen Chiu; Mark C Leake
Journal:  Int J Mol Sci       Date:  2011-04-15       Impact factor: 5.923

Review 9.  Chromosomal macrodomains and associated proteins: implications for DNA organization and replication in gram negative bacteria.

Authors:  Remus T Dame; Olga J Kalmykowa; David C Grainger
Journal:  PLoS Genet       Date:  2011-06-16       Impact factor: 5.917

Review 10.  Architecture and conservation of the bacterial DNA replication machinery, an underexploited drug target.

Authors:  Andrew Robinson; Rebecca J Causer; Nicholas E Dixon
Journal:  Curr Drug Targets       Date:  2012-03       Impact factor: 3.465

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