Literature DB >> 19352743

Polymorphism, distribution, and segregation of AFLP markers in a doubled haploid rice population.

M Maheswaran1, P K Subudhi, S Nandi, J C Xu, A Parco, D C Yang, N Huang.   

Abstract

We exploited the newly developed amplified fragment length polymorphism (AFLP) technique to study the polymorphism, distribution and inheritance of AFLP markers with a doubled haploid rice population derived from 'IR64'/'Azucena'. Using only 20 pairs of primer combinations, we detected 945 AFLP bands of which 208 were polymorphic. All 208 AFLP markers were mapped and distributed over all 12 chromosomes. When these were compared with RFLP markers already mapped in the population, we found the AFLP markers to be highly polymorphic in rice and to follow Mendelian segregation. As linkage map of rice can be generated rapidly with AFLP markers they will be very useful for marker-assisted backcrossing.

Entities:  

Year:  1997        PMID： 19352743     DOI： 10.1007/s001220050379

Source DB:  PubMed          Journal:  Theor Appl Genet        ISSN： 0040-5752            Impact factor:   5.699


  11 in total

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Journal:  Curr Biol       Date:  1995-07-01       Impact factor: 10.834

5.  A 300 kilobase interval genetic map of rice including 883 expressed sequences.

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Journal:  Nat Genet       Date:  1994-12       Impact factor: 38.330

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Journal:  Trends Genet       Date:  1993-08       Impact factor: 11.639

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Journal:  Genetics       Date:  1994-12       Impact factor: 4.562

8.  Identification of amplified restriction fragment polymorphism (AFLP) markers tightly linked to the tomato Cf-9 gene for resistance to Cladosporium fulvum.

Authors:  C M Thomas; P Vos; M Zabeau; D A Jones; K A Norcott; B P Chadwick; J D Jones
Journal:  Plant J       Date:  1995-11       Impact factor: 6.417

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Authors:  J Becker; P Vos; M Kuiper; F Salamini; M Heun
Journal:  Mol Gen Genet       Date:  1995-11-01

10.  MAPMAKER: an interactive computer package for constructing primary genetic linkage maps of experimental and natural populations.

Authors:  E S Lander; P Green; J Abrahamson; A Barlow; M J Daly; S E Lincoln; L A Newberg; L Newburg
Journal:  Genomics       Date:  1987-10       Impact factor: 5.736
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  10 in total

1.  An intraspecific genetic map of velvetbean (Mucuna sp.) based on AFLP markers.

Authors:  L J A Capo-Chichi; C M Morton; D B Weaver
Journal:  Theor Appl Genet       Date:  2003-11-29       Impact factor: 5.699

2.  The effects of nuclear DNA content (C-value) on the quality and utility of AFLP fingerprints.

Authors:  Michael F Fay; Robyn S Cowan; Ilia J Leitch
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Review 3.  Microsatellite marker development, mapping and applications in rice genetics and breeding.

Authors:  S R McCouch; X Chen; O Panaud; S Temnykh; Y Xu; Y G Cho; N Huang; T Ishii; M Blair
Journal:  Plant Mol Biol       Date:  1997-09       Impact factor: 4.076

4.  A high-density genetic map of Sorghum bicolor (L.) Moench based on 2926 AFLP, RFLP and SSR markers.

Authors:  M A Menz; R R Klein; J E Mullet; J A Obert; N C Unruh; P E Klein
Journal:  Plant Mol Biol       Date:  2002 Mar-Apr       Impact factor: 4.076

5.  AFLPs represent highly repetitive sequences in Asparagus officinalis L.

Authors:  S M Reamon-Büttner; T Schmidt; C Jung
Journal:  Chromosome Res       Date:  1999       Impact factor: 5.239

6.  A first linkage map of olive (Olea europaea L.) cultivars using RAPD, AFLP, RFLP and SSR markers.

Authors:  R la Rosa; A Angiolillo; C Guerrero; M Pellegrini; L Rallo; G Besnard; A Bervillé; A Martin; L Baldoni
Journal:  Theor Appl Genet       Date:  2003-02-11       Impact factor: 5.699

7.  Genetic diversity and phylogeny of Japanese sake-brewing rice as revealed by AFLP and nuclear and chloroplast SSR markers.

Authors:  Z Hashimoto; N Mori; M Kawamura; T Ishii; S Yoshida; M Ikegami; S Takumi; C Nakamura
Journal:  Theor Appl Genet       Date:  2004-09-16       Impact factor: 5.699

8.  Bridging the genotyping gap: using genotyping by sequencing (GBS) to add high-density SNP markers and new value to traditional bi-parental mapping and breeding populations.

Authors:  Jennifer Spindel; Mark Wright; Charles Chen; Joshua Cobb; Joseph Gage; Sandra Harrington; Mathias Lorieux; Nourollah Ahmadi; Susan McCouch
Journal:  Theor Appl Genet       Date:  2013-08-06       Impact factor: 5.699

9.  The reference genetic linkage map for the multinational Brassica rapa genome sequencing project.

Authors:  Su Ryun Choi; Graham R Teakle; Prikshit Plaha; Jeong Hee Kim; Charlotte J Allender; Elena Beynon; Zhong Yun Piao; Pilar Soengas; Tae Ho Han; Graham J King; Guy C Barker; Paul Hand; Derek J Lydiate; Jacqueline Batley; David Edwards; Dal Hoe Koo; Jae Wook Bang; Beom-Seok Park; Yong Pyo Lim
Journal:  Theor Appl Genet       Date:  2007-07-24       Impact factor: 5.699

10.  Exploiting a wheat EST database to assess genetic diversity.

Authors:  Ozge Karakas; Filiz Gurel; Ahu Altinkut Uncuoglu
Journal:  Genet Mol Biol       Date:  2010-12-01       Impact factor: 1.771
  10 in total

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