Literature DB >> 19348749

The fusion of membranes and vesicles: pathway and energy barriers from dissipative particle dynamics.

Andrea Grafmüller1, Julian Shillcock, Reinhard Lipowsky.   

Abstract

The fusion of lipid bilayers is studied with dissipative particle dynamics simulations. First, to achieve control over membrane properties, the effects of individual simulation parameters are studied and optimized. Then, a large number of fusion events for a vesicle and a planar bilayer are simulated using the optimized parameter set. In the observed fusion pathway, configurations of individual lipids play an important role. Fusion starts with individual lipids assuming a splayed tail configuration with one tail inserted in each membrane. To determine the corresponding energy barrier, we measure the average work for interbilayer flips of a lipid tail, i.e., the average work to displace one lipid tail from one bilayer to the other. This energy barrier is found to depend strongly on a certain dissipative particle dynamics parameter, and, thus, can be adjusted in the simulations. Overall, three subprocesses have been identified in the fusion pathway. Their energy barriers are estimated to lie in the range 8-15 k(B)T. The fusion probability is found to possess a maximum at intermediate tension values. As one decreases the tension, the fusion probability seems to vanish before the tensionless membrane state is attained. This would imply that the tension has to exceed a certain threshold value to induce fusion.

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Year:  2009        PMID: 19348749      PMCID: PMC2711276          DOI: 10.1016/j.bpj.2008.11.073

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  40 in total

1.  Entropy-driven tension and bending elasticity in condensed-fluid membranes.

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Journal:  Phys Rev Lett       Date:  1990-04-23       Impact factor: 9.161

2.  Unbinding transitions of interacting membranes.

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Journal:  Phys Rev Lett       Date:  1986-06-09       Impact factor: 9.161

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4.  A detailed look at vesicle fusion.

Authors:  A F Smeijers; A J Markvoort; K Pieterse; P A J Hilbers
Journal:  J Phys Chem B       Date:  2006-07-06       Impact factor: 2.991

5.  Persistent voids: a new structural metric for membrane fusion.

Authors:  Peter M Kasson; Afra Zomorodian; Sanghyun Park; Nina Singhal; Leonidas J Guibas; Vijay S Pande
Journal:  Bioinformatics       Date:  2007-05-08       Impact factor: 6.937

Review 6.  Mechanisms of initiation of membrane fusion: role of lipids.

Authors:  P K Kinnunen; J M Holopainen
Journal:  Biosci Rep       Date:  2000-12       Impact factor: 3.840

7.  Molecular dynamics simulations of lipid vesicle fusion in atomic detail.

Authors:  Volker Knecht; Siewert-Jan Marrink
Journal:  Biophys J       Date:  2007-03-23       Impact factor: 4.033

8.  Effect of chain length and unsaturation on elasticity of lipid bilayers.

Authors:  W Rawicz; K C Olbrich; T McIntosh; D Needham; E Evans
Journal:  Biophys J       Date:  2000-07       Impact factor: 4.033

9.  Surface-induced x-ray reflection visualization of membrane orientation and fusion into multibilayers.

Authors:  G Cevc; W Fenzl; L Sigl
Journal:  Science       Date:  1990-09-07       Impact factor: 47.728

10.  Interactions between neutral phospholipid bilayer membranes.

Authors:  L J Lis; M McAlister; N Fuller; R P Rand; V A Parsegian
Journal:  Biophys J       Date:  1982-03       Impact factor: 4.033

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  40 in total

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Journal:  J R Soc Interface       Date:  2012-01-18       Impact factor: 4.118

2.  Direct visualization of large and protein-free hemifusion diaphragms.

Authors:  Jörg Nikolaus; Martin Stöckl; Dieter Langosch; Rudolf Volkmer; Andreas Herrmann
Journal:  Biophys J       Date:  2010-04-07       Impact factor: 4.033

3.  Function Suggests Nano-Structure: Quantitative Structural Support for SNARE-Mediated Pore Formation.

Authors:  Ilan Hammel; Isaac Meilijson
Journal:  Neurotox Res       Date:  2015-09-25       Impact factor: 3.911

Review 4.  The plasma membrane as a capacitor for energy and metabolism.

Authors:  Supriyo Ray; Adam Kassan; Anna R Busija; Padmini Rangamani; Hemal H Patel
Journal:  Am J Physiol Cell Physiol       Date:  2015-11-25       Impact factor: 4.249

5.  Binding constants of membrane-anchored receptors and ligands depend strongly on the nanoscale roughness of membranes.

Authors:  Jinglei Hu; Reinhard Lipowsky; Thomas R Weikl
Journal:  Proc Natl Acad Sci U S A       Date:  2013-09-04       Impact factor: 11.205

6.  Physical explanation of coupled cell-cell rotational behavior and interfacial morphology: a particle dynamics model.

Authors:  Fong Yew Leong
Journal:  Biophys J       Date:  2013-11-19       Impact factor: 4.033

7.  Ezrin is a component of the HIV-1 virological presynapse and contributes to the inhibition of cell-cell fusion.

Authors:  Nathan H Roy; Marie Lambelé; Jany Chan; Menelaos Symeonides; Markus Thali
Journal:  J Virol       Date:  2014-04-23       Impact factor: 5.103

8.  Free energy landscape of rim-pore expansion in membrane fusion.

Authors:  Herre Jelger Risselada; Yuliya Smirnova; Helmut Grubmüller
Journal:  Biophys J       Date:  2014-11-18       Impact factor: 4.033

9.  SNARE-mediated membrane fusion arrests at pore expansion to regulate the volume of an organelle.

Authors:  Massimo D'Agostino; Herre Jelger Risselada; Laura J Endter; Véronique Comte-Miserez; Andreas Mayer
Journal:  EMBO J       Date:  2018-08-17       Impact factor: 11.598

10.  Evolution of the hemifused intermediate on the pathway to membrane fusion.

Authors:  Jason M Warner; Ben O'Shaughnessy
Journal:  Biophys J       Date:  2012-08-22       Impact factor: 4.033

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