Literature DB >> 19346471

Geometric and electronic structure differences between the type 3 copper sites of the multicopper oxidases and hemocyanin/tyrosinase.

Jungjoo Yoon1, Satoshi Fujii, Edward I Solomon.   

Abstract

The coupled binuclear "type 3" Cu sites are found in hemocyanin (Hc), tyrosinase (Tyr), and the multicopper oxidases (MCOs), such as laccase (Lc), and play vital roles in O(2) respiration. Although all type 3 Cu sites share the same ground state features, those of Hc/Tyr have very different ligand-binding properties relative to those of the MCOs. In particular, the type 3 Cu site in the MCOs (Lc(T3)) is a part of the trinuclear Cu cluster, and if the third (i.e., type 2) Cu is removed, the Lc(T3) site does not react with O(2). Density functional theory calculations indicate that O(2) binding in Hc is approximately 9 kcal mol(-1) more favorable than for Lc(T3). The difference is mostly found in the total energy difference of the deoxy states (approximately 7 kcal mol(-1)), where the stabilization of deoxy Lc(T3) derives from its long equilibrium Cu-Cu distance of approximately 5.5-6.5 A, relative to approximately 4.2 A in deoxy Hc/Tyr. The O(2) binding in Hc is driven by the electrostatic destabilization of the deoxy Hc site, in which the two Cu(I) centers are kept close together by the protein for facile 2-electron reduction of O(2). Alternatively, the lack of O(2) reactivity in Lc(T3) reflects the flexibility of the active site, capable of minimizing the electrostatic repulsion of the 2 Cu(I)s. Thus, the O(2) reactivity of the MCOs is intrinsic to the trinuclear Cu cluster, leading to different O(2) intermediates as required by its function of irreversible reduction of O(2) to H(2)O.

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Year:  2009        PMID: 19346471      PMCID: PMC2672473          DOI: 10.1073/pnas.0902127106

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  30 in total

1.  Structure of the laccase from Coprinus cinereus at 1.68 A resolution: evidence for different 'type 2 Cu-depleted' isoforms.

Authors:  V Ducros ; A M Brzozowski; K S Wilson; P Ostergaard ; P Schneider ; A Svendson ; G J Davies
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2001-02

2.  Crystallographic evidence that the dinuclear copper center of tyrosinase is flexible during catalysis.

Authors:  Yasuyuki Matoba; Takanori Kumagai; Aiko Yamamoto; Hironari Yoshitsu; Masanori Sugiyama
Journal:  J Biol Chem       Date:  2006-01-25       Impact factor: 5.157

3.  Oxygen Binding, Activation, and Reduction to Water by Copper Proteins.

Authors:  Edward I. Solomon; Peng Chen; Markus Metz; Sang-Kyu Lee; Amy E. Palmer
Journal:  Angew Chem Int Ed Engl       Date:  2001-12-17       Impact factor: 15.336

4.  Crystal structure and electron transfer kinetics of CueO, a multicopper oxidase required for copper homeostasis in Escherichia coli.

Authors:  Sue A Roberts; Andrzej Weichsel; Gregor Grass; Keshari Thakali; James T Hazzard; Gordon Tollin; Christopher Rensing; William R Montfort
Journal:  Proc Natl Acad Sci U S A       Date:  2002-02-26       Impact factor: 11.205

5.  The copper-iron connection in biology: structure of the metallo-oxidase Fet3p.

Authors:  Alexander B Taylor; Christopher S Stoj; Lynn Ziegler; Daniel J Kosman; P John Hart
Journal:  Proc Natl Acad Sci U S A       Date:  2005-10-17       Impact factor: 11.205

6.  Crystal structure of a laccase from the fungus Trametes versicolor at 1.90-A resolution containing a full complement of coppers.

Authors:  Klaus Piontek; Matteo Antorini; Thomas Choinowski
Journal:  J Biol Chem       Date:  2002-08-05       Impact factor: 5.157

7.  Electronic structure of the peroxy intermediate and its correlation to the native intermediate in the multicopper oxidases: insights into the reductive cleavage of the o-o bond.

Authors:  Jungjoo Yoon; Edward I Solomon
Journal:  J Am Chem Soc       Date:  2007-10-05       Impact factor: 15.419

8.  Crystal structure of a laccase from Melanocarpus albomyces with an intact trinuclear copper site.

Authors:  Nina Hakulinen; Laura-Leena Kiiskinen; Kristiina Kruus; Markku Saloheimo; Arja Paananen; Anu Koivula; Juha Rouvinen
Journal:  Nat Struct Biol       Date:  2002-08

9.  The structure of Rigidoporus lignosus Laccase containing a full complement of copper ions, reveals an asymmetrical arrangement for the T3 copper pair.

Authors:  Silvia Garavaglia; Maria Teresa Cambria; Marco Miglio; Santa Ragusa; Vito Iacobazzi; Ferdinando Palmieri; Chiara D'Ambrosio; Andrea Scaloni; Menico Rizzi
Journal:  J Mol Biol       Date:  2004-10-01       Impact factor: 5.469

10.  O2 reduction to H2O by the multicopper oxidases.

Authors:  Edward I Solomon; Anthony J Augustine; Jungjoo Yoon
Journal:  Dalton Trans       Date:  2008-05-07       Impact factor: 4.390

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  16 in total

1.  Molecular oxygen and sulfur reactivity of a cyclotriveratrylene derived trinuclear copper(I) complex.

Authors:  Debabrata Maiti; Julia S Woertink; Reza A Ghiladi; Edward I Solomon; Kenneth D Karlin
Journal:  Inorg Chem       Date:  2009-09-07       Impact factor: 5.165

2.  Hydration facilitates oxygenation of hemocyanin: perspectives from molecular dynamics simulations.

Authors:  Khair Bux; Syed Abid Ali; Syed Tarique Moin
Journal:  Eur Biophys J       Date:  2018-07-04       Impact factor: 1.733

3.  Mixed-type inhibition of tyrosinase from Agaricus bisporus by terephthalic acid: computational simulations and kinetics.

Authors:  Shang-Jun Yin; Yue-Xiu Si; Yong-Fu Chen; Guo-Ying Qian; Zhi-Rong Lü; Sangho Oh; Jinhyuk Lee; Sanghyuk Lee; Jun-Mo Yang; Dong-Youn Lee; Yong-Doo Park
Journal:  Protein J       Date:  2011-04       Impact factor: 2.371

Review 4.  Copper active sites in biology.

Authors:  Edward I Solomon; David E Heppner; Esther M Johnston; Jake W Ginsbach; Jordi Cirera; Munzarin Qayyum; Matthew T Kieber-Emmons; Christian H Kjaergaard; Ryan G Hadt; Li Tian
Journal:  Chem Rev       Date:  2014-03-03       Impact factor: 60.622

5.  Systematic perturbation of the trinuclear copper cluster in the multicopper oxidases: the role of active site asymmetry in its reduction of O2 to H2O.

Authors:  Anthony J Augustine; Christian Kjaergaard; Munzarin Qayyum; Lynn Ziegler; Daniel J Kosman; Keith O Hodgson; Britt Hedman; Edward I Solomon
Journal:  J Am Chem Soc       Date:  2010-05-05       Impact factor: 15.419

Review 6.  Copper dioxygen (bio)inorganic chemistry.

Authors:  Edward I Solomon; Jake W Ginsbach; David E Heppner; Matthew T Kieber-Emmons; Christian H Kjaergaard; Pieter J Smeets; Li Tian; Julia S Woertink
Journal:  Faraday Discuss       Date:  2011       Impact factor: 4.008

7.  NMR study of the exchange coupling in the trinuclear cluster of the multicopper oxidase Fet3p.

Authors:  María-Eugenia Zaballa; Lynn Ziegler; Daniel J Kosman; Alejandro J Vila
Journal:  J Am Chem Soc       Date:  2010-08-18       Impact factor: 15.419

8.  X-ray absorption near-edge spectroscopy in bioinorganic chemistry: Application to M-O2 systems.

Authors:  Ritimukta Sarangi
Journal:  Coord Chem Rev       Date:  2012-07-03       Impact factor: 22.315

9.  Mechanisms underlying dioxygen reduction in laccases. Structural and modelling studies focusing on proton transfer.

Authors:  Isabel Bento; Catarina S Silva; Zhenjia Chen; Lígia O Martins; Peter F Lindley; Cláudio M Soares
Journal:  BMC Struct Biol       Date:  2010-09-07

Review 10.  Synthetic Fe/Cu Complexes: Toward Understanding Heme-Copper Oxidase Structure and Function.

Authors:  Suzanne M Adam; Gayan B Wijeratne; Patrick J Rogler; Daniel E Diaz; David A Quist; Jeffrey J Liu; Kenneth D Karlin
Journal:  Chem Rev       Date:  2018-10-29       Impact factor: 60.622

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