Literature DB >> 17918839

Electronic structure of the peroxy intermediate and its correlation to the native intermediate in the multicopper oxidases: insights into the reductive cleavage of the o-o bond.

Jungjoo Yoon1, Edward I Solomon.   

Abstract

The multicopper oxidases (MCOs) utilize a blue type 1 (T1) copper site and a trinuclear Cu cluster composed of a type 2 (T2) and a binuclear type 3 (T3) site that together catalyze the four-electron reduction of O2 to H2O. Reaction of the fully reduced enzyme with O2 proceeds via two sequential two-electron steps generating the peroxy intermediate (PI) and the native intermediate (NI). While a detailed description of the geometric and electronic structure of NI has been developed, this has been more elusive for PI largely due to the diamagnetic nature of its ground state. Density functional theory (DFT) calculations have been used to correlate to spectroscopic data to generate a description of the geometric and electronic structure of PI. A highly conserved carboxylate residue near the T2 site is found to play a critical role in stabilizing the PI structure, which induces oxidation of the T2 and one T3 Cu center and strong superexchange stabilization via the peroxide bridge, allowing irreversible binding of O2 at the trinuclear Cu site. Correlation of PI to NI is achieved using a two-dimensional potential energy surface generated to describe the catalytic two-electron reduction of the peroxide O-O bond by the MCOs. It is found that the reaction is thermodynamically driven by the relative stability of NI and the involvement of the simultaneous two-electron-transfer process. A low activation barrier (calculated approximately 5-6 kcal/mol and experimental approximately 3-5 kcal/mol) is produced by the triangular topology of the trinuclear Cu cluster site, as this symmetry provides good donor-acceptor frontier molecular orbital (FMO) overlap. Finally, the O-O bond cleavage in the trinuclear Cu cluster can be achieved via either a proton-assisted or a proton-unassisted process, allowing the MCOs to function over a wide range of pH. It is found that while the proton helps to stabilize the acceptor O22- sigma* orbital in the proton-assisted process for better donor-acceptor FMO overlap, the third oxidized Cu center in the trinuclear site assumes the role as a Lewis acid in the proton-unassisted process for similarly efficient O-O bond cleavage.

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Year:  2007        PMID: 17918839      PMCID: PMC2532529          DOI: 10.1021/ja073947a

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  43 in total

1.  Crystallographic evidence that the dinuclear copper center of tyrosinase is flexible during catalysis.

Authors:  Yasuyuki Matoba; Takanori Kumagai; Aiko Yamamoto; Hironari Yoshitsu; Masanori Sugiyama
Journal:  J Biol Chem       Date:  2006-01-25       Impact factor: 5.157

2.  Decay of the peroxide intermediate in laccase: reductive cleavage of the O-O bond.

Authors:  A E Palmer; S K Lee; E I Solomon
Journal:  J Am Chem Soc       Date:  2001-07-11       Impact factor: 15.419

3.  A 17O-effect on the EPR spectrum of the intermediate in the dioxygen-laccase reaction.

Authors:  R Aasa; R Brändén; J Deinum; B G Malmström; B Reinhammar; T Vänngård
Journal:  Biochem Biophys Res Commun       Date:  1976-06-21       Impact factor: 3.575

4.  Spectroscopic and electronic structure studies of the trinuclear Cu cluster active site of the multicopper oxidase laccase: nature of its coordination unsaturation.

Authors:  Liliana Quintanar; Jungjoo Yoon; Constantino P Aznar; Amy E Palmer; K Kristoffer Andersson; R David Britt; Edward I Solomon
Journal:  J Am Chem Soc       Date:  2005-10-12       Impact factor: 15.419

5.  On the spectral features associated with peroxide reactivity of the coupled binuclear copper active site in type 2 depleted and native Rhus laccase.

Authors:  J E Penner-Hahn; B Hedman; K O Hodgson; D J Spira; E I Solomon
Journal:  Biochem Biophys Res Commun       Date:  1984-03-15       Impact factor: 3.575

6.  Ground-state electronic and magnetic properties of a mu3-oxo-bridged trinuclear Cu(II) complex: correlation to the native intermediate of the multicopper oxidases.

Authors:  Jungjoo Yoon; Edward I Solomon
Journal:  Inorg Chem       Date:  2005-10-31       Impact factor: 5.165

7.  Crystal structure and electron transfer kinetics of CueO, a multicopper oxidase required for copper homeostasis in Escherichia coli.

Authors:  Sue A Roberts; Andrzej Weichsel; Gregor Grass; Keshari Thakali; James T Hazzard; Gordon Tollin; Christopher Rensing; William R Montfort
Journal:  Proc Natl Acad Sci U S A       Date:  2002-02-26       Impact factor: 11.205

8.  The copper-iron connection in biology: structure of the metallo-oxidase Fet3p.

Authors:  Alexander B Taylor; Christopher S Stoj; Lynn Ziegler; Daniel J Kosman; P John Hart
Journal:  Proc Natl Acad Sci U S A       Date:  2005-10-17       Impact factor: 11.205

9.  Crystal structure of a laccase from the fungus Trametes versicolor at 1.90-A resolution containing a full complement of coppers.

Authors:  Klaus Piontek; Matteo Antorini; Thomas Choinowski
Journal:  J Biol Chem       Date:  2002-08-05       Impact factor: 5.157

10.  The structure of Rigidoporus lignosus Laccase containing a full complement of copper ions, reveals an asymmetrical arrangement for the T3 copper pair.

Authors:  Silvia Garavaglia; Maria Teresa Cambria; Marco Miglio; Santa Ragusa; Vito Iacobazzi; Ferdinando Palmieri; Chiara D'Ambrosio; Andrea Scaloni; Menico Rizzi
Journal:  J Mol Biol       Date:  2004-10-01       Impact factor: 5.469

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  27 in total

1.  The Fox1 ferroxidase of Chlamydomonas reinhardtii: a new multicopper oxidase structural paradigm.

Authors:  Alaina J Terzulli; Daniel J Kosman
Journal:  J Biol Inorg Chem       Date:  2008-11-21       Impact factor: 3.358

Review 2.  Laccases: a never-ending story.

Authors:  Paola Giardina; Vincenza Faraco; Cinzia Pezzella; Alessandra Piscitelli; Sophie Vanhulle; Giovanni Sannia
Journal:  Cell Mol Life Sci       Date:  2009-10-22       Impact factor: 9.261

3.  Calculating the geometry and Raman spectrum of physiological bis(L-histidinato)copper(II): an assessment of DFT functionals for aqueous and isolated systems.

Authors:  Jasmina Sabolović; Michael Ramek; Marijana Marković
Journal:  J Mol Model       Date:  2017-09-26       Impact factor: 1.810

Review 4.  Activation of dioxygen by copper metalloproteins and insights from model complexes.

Authors:  David A Quist; Daniel E Diaz; Jeffrey J Liu; Kenneth D Karlin
Journal:  J Biol Inorg Chem       Date:  2016-12-05       Impact factor: 3.358

Review 5.  Copper active sites in biology.

Authors:  Edward I Solomon; David E Heppner; Esther M Johnston; Jake W Ginsbach; Jordi Cirera; Munzarin Qayyum; Matthew T Kieber-Emmons; Christian H Kjaergaard; Ryan G Hadt; Li Tian
Journal:  Chem Rev       Date:  2014-03-03       Impact factor: 60.622

6.  X-ray-induced catalytic active-site reduction of a multicopper oxidase: structural insights into the proton-relay mechanism and O2-reduction states.

Authors:  Hugo Serrano-Posada; Sara Centeno-Leija; Sonia Patricia Rojas-Trejo; Claudia Rodríguez-Almazán; Vivian Stojanoff; Enrique Rudiño-Piñera
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2015-11-26

7.  Systematic perturbation of the trinuclear copper cluster in the multicopper oxidases: the role of active site asymmetry in its reduction of O2 to H2O.

Authors:  Anthony J Augustine; Christian Kjaergaard; Munzarin Qayyum; Lynn Ziegler; Daniel J Kosman; Keith O Hodgson; Britt Hedman; Edward I Solomon
Journal:  J Am Chem Soc       Date:  2010-05-05       Impact factor: 15.419

8.  Two-Electron Reduction versus One-Electron Oxidation of the Type 3 Pair in the Multicopper Oxidases.

Authors:  Christian H Kjaergaard; Stephen M Jones; Sébastien Gounel; Nicolas Mano; Edward I Solomon
Journal:  J Am Chem Soc       Date:  2015-07-01       Impact factor: 15.419

9.  Molecular origin of rapid versus slow intramolecular electron transfer in the catalytic cycle of the multicopper oxidases.

Authors:  David E Heppner; Christian H Kjaergaard; Edward I Solomon
Journal:  J Am Chem Soc       Date:  2013-08-07       Impact factor: 15.419

10.  Four-electron reduction of dioxygen by a multicopper oxidase, CueO, and roles of Asp112 and Glu506 located adjacent to the trinuclear copper center.

Authors:  Kunishige Kataoka; Ryosuke Sugiyama; Shun Hirota; Megumi Inoue; Kanae Urata; Yoichi Minagawa; Daisuke Seo; Takeshi Sakurai
Journal:  J Biol Chem       Date:  2009-03-18       Impact factor: 5.157

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