Literature DB >> 19342795

Crystallization and preliminary X-ray analysis of D-2-hydroxyacid dehydrogenase from Haloferax mediterranei.

J Domenech1, P J Baker, S E Sedelnikova, H F Rodgers, D W Rice, J Ferrer.   

Abstract

D-2-hydroxyacid dehydrogenase (D2-HDH) from Haloferax mediterranei has been overexpressed in Escherichia coli, solubilized in 8 M urea and refolded by rapid dilution. The protein was purified and crystallized by the hanging-drop vapour-diffusion method using ammonium sulfate or PEG 3350 as precipitant. Two crystal forms representing the free enzyme and the nonproductive ternary complex with alpha-ketohexanoic acid and NAD(+) grew under these conditions. Crystals of form I diffracted to beyond 3.0 A resolution and belonged to the monoclinic space group P2(1), with unit-cell parameters a = 66.0, b = 119.6, c = 86.2 A, beta = 96.3 degrees . Crystals of form II diffracted to beyond 2.0 A resolution and belonged to the triclinic space group P1, with unit-cell parameters a = 66.5, b = 75.2, c = 77.6 A, alpha = 109.1, beta = 107.5, gamma = 95.9 degrees. The calculated values for V(M) and analysis of the self-rotation and self-Patterson functions suggest that the asymmetric unit in both crystal forms contains two dimers related by pseudo-translational symmetry.

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Year:  2009        PMID: 19342795      PMCID: PMC2664775          DOI: 10.1107/S174430910900863X

Source DB:  PubMed          Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun        ISSN: 1744-3091


  20 in total

Review 1.  Halophilic enzymes: proteins with a grain of salt.

Authors:  M Mevarech; F Frolow; L M Gloss
Journal:  Biophys Chem       Date:  2000-08-30       Impact factor: 2.352

2.  Structure of a halophilic nucleoside diphosphate kinase from Halobacterium salinarum.

Authors:  Hüseyin Besir; Kornelius Zeth; Andreas Bracher; Ursula Heider; Matsujiro Ishibashi; Masao Tokunaga; Dieter Oesterhelt
Journal:  FEBS Lett       Date:  2005-11-09       Impact factor: 4.124

3.  Structural features of halophilicity derived from the crystal structure of dihydrofolate reductase from the Dead Sea halophilic archaeon, Haloferax volcanii.

Authors:  U Pieper; G Kapadia; M Mevarech; O Herzberg
Journal:  Structure       Date:  1998-01-15       Impact factor: 5.006

4.  A new D-2-hydroxyacid dehydrogenase with dual coenzyme-specificity from Haloferax mediterranei, sequence analysis and heterologous overexpression.

Authors:  J Domenech; J Ferrer
Journal:  Biochim Biophys Acta       Date:  2006-09-06

5.  Unique amino acid composition of proteins in halophilic bacteria.

Authors:  Satoshi Fukuchi; Kazuaki Yoshimune; Mamoru Wakayama; Mitsuaki Moriguchi; Ken Nishikawa
Journal:  J Mol Biol       Date:  2003-03-21       Impact factor: 5.469

6.  Proteomics of Halophilic archaea.

Authors:  Won-A Joo; Chan-Wha Kim
Journal:  J Chromatogr B Analyt Technol Biomed Life Sci       Date:  2005-02-05       Impact factor: 3.205

7.  Genome sequence of Haloarcula marismortui: a halophilic archaeon from the Dead Sea.

Authors:  Nitin S Baliga; Richard Bonneau; Marc T Facciotti; Min Pan; Gustavo Glusman; Eric W Deutsch; Paul Shannon; Yulun Chiu; Rueyhung Sting Weng; Rueichi Richie Gan; Pingliang Hung; Shailesh V Date; Edward Marcotte; Leroy Hood; Wailap Victor Ng
Journal:  Genome Res       Date:  2004-11       Impact factor: 9.043

8.  Crystal structure of a NAD-dependent D-glycerate dehydrogenase at 2.4 A resolution.

Authors:  J D Goldberg; T Yoshida; P Brick
Journal:  J Mol Biol       Date:  1994-03-04       Impact factor: 5.469

9.  Domain closure, substrate specificity and catalysis of D-lactate dehydrogenase from Lactobacillus bulgaricus.

Authors:  Adelia Razeto; Sunil Kochhar; Herbert Hottinger; Miroslava Dauter; Keith S Wilson; Victor S Lamzin
Journal:  J Mol Biol       Date:  2002-04-19       Impact factor: 5.469

10.  Iron-oxo clusters biomineralizing on protein surfaces: structural analysis of Halobacterium salinarum DpsA in its low- and high-iron states.

Authors:  Kornelius Zeth; Stefanie Offermann; Lars-Oliver Essen; Dieter Oesterhelt
Journal:  Proc Natl Acad Sci U S A       Date:  2004-09-13       Impact factor: 11.205

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