Literature DB >> 16293253

Structure of a halophilic nucleoside diphosphate kinase from Halobacterium salinarum.

Hüseyin Besir1, Kornelius Zeth, Andreas Bracher, Ursula Heider, Matsujiro Ishibashi, Masao Tokunaga, Dieter Oesterhelt.   

Abstract

Nucleoside diphosphate kinase from the halophilic archaeon Halobacterium salinarum was crystallized in a free state and a substrate-bound form with CDP. The structures were solved to a resolution of 2.35 and 2.2A, respectively. Crystals with the apo-form were obtained with His6-tagged enzyme, whereas the untagged form was used for co-crystallization with the nucleotide. Crosslinking under different salt and pH conditions revealed a stronger oligomerization tendency for the tagged protein at low and high salt concentrations. The influence of the His6-tag on the halophilic nature of the enzyme is discussed on the basis of the observed structural properties.

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Year:  2005        PMID: 16293253     DOI: 10.1016/j.febslet.2005.10.052

Source DB:  PubMed          Journal:  FEBS Lett        ISSN: 0014-5793            Impact factor:   4.124


  18 in total

1.  Characterization of alcohol dehydrogenase (ADH12) from Haloarcula marismortui, an extreme halophile from the Dead Sea.

Authors:  Leanne M Timpson; Diya Alsafadi; Cillín Mac Donnchadha; Susan Liddell; Michael A Sharkey; Francesca Paradisi
Journal:  Extremophiles       Date:  2011-10-21       Impact factor: 2.395

2.  Molecular mechanism of distinct salt-dependent enzyme activity of two halophilic nucleoside diphosphate kinases.

Authors:  Akihiro Yamamura; Takefumi Ichimura; Masahiro Kamekura; Toru Mizuki; Ron Usami; Tsukasa Makino; Jun Ohtsuka; Ken-ichi Miyazono; Masahiko Okai; Koji Nagata; Masaru Tanokura
Journal:  Biophys J       Date:  2009-06-03       Impact factor: 4.033

3.  Crystallization and preliminary X-ray analysis of D-2-hydroxyacid dehydrogenase from Haloferax mediterranei.

Authors:  J Domenech; P J Baker; S E Sedelnikova; H F Rodgers; D W Rice; J Ferrer
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2009-03-26

4.  Neutron scattering reveals extremely slow cell water in a Dead Sea organism.

Authors:  Moeava Tehei; Bruno Franzetti; Kathleen Wood; Frank Gabel; Elisa Fabiani; Marion Jasnin; Michaela Zamponi; Dieter Oesterhelt; Giuseppe Zaccai; Margaret Ginzburg; Ben-Zion Ginzburg
Journal:  Proc Natl Acad Sci U S A       Date:  2007-01-10       Impact factor: 11.205

5.  Crystal structures of native and xylosaccharide-bound alkali thermostable xylanase from an alkalophilic Bacillus sp. NG-27: structural insights into alkalophilicity and implications for adaptation to polyextreme conditions.

Authors:  Karuppasamy Manikandan; Amit Bhardwaj; Naveen Gupta; Neratur K Lokanath; Amit Ghosh; Vanga Siva Reddy; Suryanarayanarao Ramakumar
Journal:  Protein Sci       Date:  2006-07-05       Impact factor: 6.725

6.  An antibiotic-resistance enzyme from a deep-sea bacterium.

Authors:  Marta Toth; Clyde Smith; Hilary Frase; Shahriar Mobashery; Sergei Vakulenko
Journal:  J Am Chem Soc       Date:  2010-01-20       Impact factor: 15.419

7.  Increase of salt dependence of halophilic nucleoside diphosphate kinase caused by a single amino acid substitution.

Authors:  Matsujiro Ishibashi; Tomoe Hayashi; Chiho Yoshida; Masao Tokunaga
Journal:  Extremophiles       Date:  2013-04-23       Impact factor: 2.395

8.  Dissecting the unique nucleotide specificity of mimivirus nucleoside diphosphate kinase.

Authors:  Sandra Jeudy; Audrey Lartigue; Jean-Michel Claverie; Chantal Abergel
Journal:  J Virol       Date:  2009-05-13       Impact factor: 5.103

9.  Effect of organic solvents on the activity and stability of halophilic alcohol dehydrogenase (ADH2) from Haloferax volcanii.

Authors:  Diya Alsafadi; Francesca Paradisi
Journal:  Extremophiles       Date:  2012-11-23       Impact factor: 2.395

10.  The crystal structure of Haloferax volcanii proliferating cell nuclear antigen reveals unique surface charge characteristics due to halophilic adaptation.

Authors:  Jody A Winter; Panayiotis Christofi; Shaun Morroll; Karen A Bunting
Journal:  BMC Struct Biol       Date:  2009-08-22
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