Literature DB >> 19342770

Structure of Debaryomyces castellii CBS 2923 phytase.

M Ragon1, F Hoh, A Aumelas, L Chiche, G Moulin, H Boze.   

Abstract

Phytate (myo-inositol hexakisphosphate) is the primary storage form of phosphate in seeds and legumes (Reddy et al., 1982). Phytases are phosphatases that hydrolyze phytate to less phosphorylated myo-inositol derivatives and inorganic phosphate. The crystal structure of phytase from Debaryomyces castellii has been determined at 2.3 A resolution. The crystals belonged to space group P6(5)22, with unit-cell parameters a = 121.65, c = 332.24 A. The structure was solved by molecular replacement and refined to a final R factor of 15.7% (R(free) = 20.9%). The final model consists of a dimer (with two monomers of 458 residues), five NAG molecules and 628 water molecules.

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Year:  2009        PMID: 19342770      PMCID: PMC2664750          DOI: 10.1107/S1744309109008653

Source DB:  PubMed          Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun        ISSN: 1744-3091


  21 in total

Review 1.  Production, purification and properties of microbial phytases.

Authors:  A Pandey; G Szakacs; C R Soccol; J A Rodriguez-Leon; V T Soccol
Journal:  Bioresour Technol       Date:  2001-05       Impact factor: 9.642

2.  Automated protein model building combined with iterative structure refinement.

Authors:  A Perrakis; R Morris; V S Lamzin
Journal:  Nat Struct Biol       Date:  1999-05

3.  Crystal structure of Aspergillus niger pH 2.5 acid phosphatase at 2. 4 A resolution.

Authors:  D Kostrewa; M Wyss; A D'Arcy; A P van Loon
Journal:  J Mol Biol       Date:  1999-05-21       Impact factor: 5.469

4.  Structure validation by Calpha geometry: phi,psi and Cbeta deviation.

Authors:  Simon C Lovell; Ian W Davis; W Bryan Arendall; Paul I W de Bakker; J Michael Word; Michael G Prisant; Jane S Richardson; David C Richardson
Journal:  Proteins       Date:  2003-02-15

5.  ESPript/ENDscript: Extracting and rendering sequence and 3D information from atomic structures of proteins.

Authors:  Patrice Gouet; Xavier Robert; Emmanuel Courcelle
Journal:  Nucleic Acids Res       Date:  2003-07-01       Impact factor: 16.971

6.  Refinement of macromolecular structures by the maximum-likelihood method.

Authors:  G N Murshudov; A A Vagin; E J Dodson
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  1997-05-01

7.  Crystal structure of phytase from Aspergillus ficuum at 2.5 A resolution.

Authors:  D Kostrewa; F Grüninger-Leitch; A D'Arcy; C Broger; D Mitchell; A P van Loon
Journal:  Nat Struct Biol       Date:  1997-03

Review 8.  Phytates in legumes and cereals.

Authors:  N R Reddy; S K Sathe; D K Salunkhe
Journal:  Adv Food Res       Date:  1982

9.  Structures of Selenomonas ruminantium phytase in complex with persulfated phytate: DSP phytase fold and mechanism for sequential substrate hydrolysis.

Authors:  Hsing-Mao Chu; Rey-Ting Guo; Ting-Wan Lin; Chia-Cheng Chou; Hui-Lin Shr; Hui-Lin Lai; Tsung-Yin Tang; Kuo-Joan Cheng; Brent L Selinger; Andrew H-J Wang
Journal:  Structure       Date:  2004-11       Impact factor: 5.006

10.  Crystal structure of a heat-resilient phytase from Aspergillus fumigatus, carrying a phosphorylated histidine.

Authors:  Tao Xiang; Qun Liu; Ashley M Deacon; Matthew Koshy; Irina A Kriksunov; Xin Gen Lei; Quan Hao; Daniel J Thiel
Journal:  J Mol Biol       Date:  2004-05-28       Impact factor: 5.469

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  9 in total

1.  Snapshots during the catalytic cycle of a histidine acid phytase reveal an induced fit structural mechanism.

Authors:  Isabella M Acquistapace; Monika A Ziętek; Arthur W H Li; Melissa Salmon; Imke Kühn; Mike R Bedford; Charles A Brearley; Andrew M Hemmings
Journal:  J Biol Chem       Date:  2020-10-14       Impact factor: 5.157

2.  Computational-based structural, functional and phylogenetic analysis of Enterobacter phytases.

Authors:  Krishnendu Pramanik; Shreyasi Kundu; Sandipan Banerjee; Pallab Kumar Ghosh; Tushar Kanti Maiti
Journal:  3 Biotech       Date:  2018-05-19       Impact factor: 2.406

3.  Insights to the Structural Basis for the Stereospecificity of the Escherichia coli Phytase, AppA.

Authors:  Isabella M Acquistapace; Emma J Thompson; Imke Kühn; Mike R Bedford; Charles A Brearley; Andrew M Hemmings
Journal:  Int J Mol Sci       Date:  2022-06-06       Impact factor: 6.208

4.  Degradation of phytate by the 6-phytase from Hafnia alvei: a combined structural and solution study.

Authors:  Antonio Ariza; Olga V Moroz; Elena V Blagova; Johan P Turkenburg; Jitka Waterman; Shirley M Roberts; Jesper Vind; Carsten Sjøholm; Søren F Lassen; Leonardo De Maria; Vibe Glitsoe; Lars K Skov; Keith S Wilson
Journal:  PLoS One       Date:  2013-05-31       Impact factor: 3.240

5.  Phytase production by Aspergillus niger CFR 335 and Aspergillus ficuum SGA 01 through submerged and solid-state fermentation.

Authors:  Gunashree B Shivanna; Govindarajulu Venkateswaran
Journal:  ScientificWorldJournal       Date:  2014-01-29

6.  Enhancing thermal tolerance of Aspergillus niger PhyA phytase directed by structural comparison and computational simulation.

Authors:  Nanyu Han; Huabiao Miao; Tingting Yu; Bo Xu; Yunjuan Yang; Qian Wu; Rui Zhang; Zunxi Huang
Journal:  BMC Biotechnol       Date:  2018-06-01       Impact factor: 2.563

7.  Snapshots during the catalytic cycle of a histidine acid phytase reveal an induced-fit structural mechanism.

Authors:  Isabella M Acquistapace; Monika A Zi Etek; Arthur W H Li; Melissa Salmon; Imke Kühn; Mike R Bedford; Charles A Brearley; Andrew M Hemmings
Journal:  J Biol Chem       Date:  2020-12-18       Impact factor: 5.157

8.  Screening For Yeast Phytase Leads to the Identification of a New Cell-Bound and Secreted Activity in Cyberlindnera jadinii CJ2.

Authors:  Claudia Capusoni; Immacolata Serra; Silvia Donzella; Concetta Compagno
Journal:  Front Bioeng Biotechnol       Date:  2021-05-24

9.  Mechanism of protein kinetic stabilization by engineered disulfide crosslinks.

Authors:  Inmaculada Sanchez-Romero; Antonio Ariza; Keith S Wilson; Michael Skjøt; Jesper Vind; Leonardo De Maria; Lars K Skov; Jose M Sanchez-Ruiz
Journal:  PLoS One       Date:  2013-07-30       Impact factor: 3.240

  9 in total

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