Literature DB >> 19336443

Hooke: an open software platform for force spectroscopy.

Massimo Sandal1, Fabrizio Benedetti, Marco Brucale, Alberto Gomez-Casado, Bruno Samorì.   

Abstract

SUMMARY: Hooke is an open source, extensible software intended for analysis of atomic force microscope (AFM)-based single molecule force spectroscopy (SMFS) data. We propose it as a platform on which published and new algorithms for SMFS analysis can be integrated in a standard, open fashion, as a general solution to the current lack of a standard software for SMFS data analysis. Specific features and support for file formats are coded as independent plugins. Any user can code new plugins, extending the software capabilities. Basic automated dataset filtering and semi-automatic analysis facilities are included. AVAILABILITY: Software and documentation are available at (http://code.google.com/p/hooke). Hooke is a free software under the GNU Lesser General Public License.

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Year:  2009        PMID: 19336443     DOI: 10.1093/bioinformatics/btp180

Source DB:  PubMed          Journal:  Bioinformatics        ISSN: 1367-4803            Impact factor:   6.937


  7 in total

1.  Nonkinetic modeling of the mechanical unfolding of multimodular proteins: theory and experiments.

Authors:  F Benedetti; C Micheletti; G Bussi; S K Sekatskii; G Dietler
Journal:  Biophys J       Date:  2011-09-20       Impact factor: 4.033

2.  Improving single molecule force spectroscopy through automated real-time data collection and quantification of experimental conditions.

Authors:  Zackary N Scholl; Piotr E Marszalek
Journal:  Ultramicroscopy       Date:  2013-08-07       Impact factor: 2.689

3.  Worm-like Ising model for protein mechanical unfolding under the effect of osmolytes.

Authors:  Daniel Aioanei; Marco Brucale; Isabella Tessari; Luigi Bubacco; Bruno Samorì
Journal:  Biophys J       Date:  2012-01-18       Impact factor: 4.033

4.  Can Dissipative Properties of Single Molecules Be Extracted from a Force Spectroscopy Experiment?

Authors:  Fabrizio Benedetti; Yulia Gazizova; Andrzej J Kulik; Piotr E Marszalek; Dmitry V Klinov; Giovanni Dietler; Sergey K Sekatskii
Journal:  Biophys J       Date:  2016-09-20       Impact factor: 4.033

5.  Efficient unfolding pattern recognition in single molecule force spectroscopy data.

Authors:  Bill Andreopoulos; Dirk Labudde
Journal:  Algorithms Mol Biol       Date:  2011-06-06       Impact factor: 1.405

6.  Mechanical stability of bivalent transition metal complexes analyzed by single-molecule force spectroscopy.

Authors:  Manuel Gensler; Christian Eidamshaus; Maurice Taszarek; Hans-Ulrich Reissig; Jürgen P Rabe
Journal:  Beilstein J Org Chem       Date:  2015-05-15       Impact factor: 2.883

7.  Large-Area Oxidized Phosphorene Nanoflakes Obtained by Electrospray for Energy-Harvesting Applications.

Authors:  Salvatore Moschetto; Margherita Bolognesi; Federico Prescimone; Marco Brucale; Alessio Mezzi; Luca Ortolani; Maria Caporali; Pasqualantonio Pingue; Manuel Serrano-Ruiz; Dario Pisignano; Maurizio Peruzzini; Luana Persano; Stefano Toffanin
Journal:  ACS Appl Nano Mater       Date:  2021-03-29
  7 in total

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