Literature DB >> 19334539

[Linear B-cell epitope prediction].

Ia I Davydov, A G Tonevitskiĭ.   

Abstract

Combination of sliding window method with physical properties scale of amino acids is a classical approach for linear B-cell epitope prediction. But it was shown that accuracy of these methods is poor. We reviewed classical and new algorithms of epitope prediction and present own implementation of one of them. The AAPPred software is available online at http://www.bioinf.ru/aappred/.

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Year:  2009        PMID: 19334539     DOI: 10.1134/s0026893309010221

Source DB:  PubMed          Journal:  Mol Biol (Mosk)        ISSN: 0026-8984


  30 in total

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Authors:  Helena V Chetverina; Timur R Samatov; Victor I Ugarov; Alexander B Chetverin
Journal:  Biotechniques       Date:  2002-07       Impact factor: 1.993

2.  Differential stability of control gene and fusion gene transcripts over time may hamper accurate quantification of minimal residual disease--a study within the Europe Against Cancer Program.

Authors:  V H J van der Velden; N Boeckx; M Gonzalez; M Malec; G Barbany; T Lion; E Gottardi; N Pallisgaard; E Beillard; W C J Hop; P G Hoogeveen; J Gabert; J J M van Dongen
Journal:  Leukemia       Date:  2004-04       Impact factor: 11.528

Review 3.  Nanocolonies: detection, cloning, and analysis of individual molecules.

Authors:  H V Chetverina; A B Chetverin
Journal:  Biochemistry (Mosc)       Date:  2008-12       Impact factor: 2.487

Review 4.  Molecular colony technique: a new tool for biomedical research and clinical practice.

Authors:  Alexander B Chetverin; Helena V Chetverina
Journal:  Prog Nucleic Acid Res Mol Biol       Date:  2008

5.  Enzymatic amplification of beta-globin genomic sequences and restriction site analysis for diagnosis of sickle cell anemia.

Authors:  R K Saiki; S Scharf; F Faloona; K B Mullis; G T Horn; H A Erlich; N Arnheim
Journal:  Science       Date:  1985-12-20       Impact factor: 47.728

6.  Single-step method of RNA isolation by acid guanidinium thiocyanate-phenol-chloroform extraction.

Authors:  P Chomczynski; N Sacchi
Journal:  Anal Biochem       Date:  1987-04       Impact factor: 3.365

Review 7.  Standardized RT-PCR analysis of fusion gene transcripts from chromosome aberrations in acute leukemia for detection of minimal residual disease. Report of the BIOMED-1 Concerted Action: investigation of minimal residual disease in acute leukemia.

Authors:  J J van Dongen; E A Macintyre; J A Gabert; E Delabesse; V Rossi; G Saglio; E Gottardi; A Rambaldi; G Dotti; F Griesinger; A Parreira; P Gameiro; M G Diáz; M Malec; A W Langerak; J F San Miguel; A Biondi
Journal:  Leukemia       Date:  1999-12       Impact factor: 11.528

Review 8.  Detection of minimal residual disease in acute myeloid leukemia.

Authors:  Maria R Baer
Journal:  Curr Oncol Rep       Date:  2002-09       Impact factor: 5.075

9.  Real-time RT-PCR analysis of mRNA decay: half-life of Beta-actin mRNA in human leukemia CCRF-CEM and Nalm-6 cell lines.

Authors:  Guy J Leclerc; Gilles M Leclerc; Julio C Barredo
Journal:  Cancer Cell Int       Date:  2002-03-07       Impact factor: 5.722

10.  Smallpox research activities: U.S. interagency collaboration, 2001.

Authors:  James W LeDuc; Inger Damon; David A Relman; John Huggins; Peter B Jahrling
Journal:  Emerg Infect Dis       Date:  2002-07       Impact factor: 6.883

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  3 in total

1.  Deep learning methods improve linear B-cell epitope prediction.

Authors:  Tao Liu; Kaiwen Shi; Wuju Li
Journal:  BioData Min       Date:  2020-04-17       Impact factor: 2.522

2.  Classification epitopes in groups based on their protein family.

Authors:  Edgar Kozlova; Benjamin Viart; Ricardo de Avila; Liza Felicori; Carlos Chavez-Olortegui
Journal:  BMC Bioinformatics       Date:  2015-12-16       Impact factor: 3.169

3.  Identification and characterization of common B cell epitope in bovine leukemia virus via high-throughput peptide screening system in infected cattle.

Authors:  Lanlan Bai; Hiroyuki Otsuki; Hirotaka Sato; Junko Kohara; Emiko Isogai; Shin-nosuke Takeshima; Yoko Aida
Journal:  Retrovirology       Date:  2015-12-30       Impact factor: 4.602

  3 in total

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