| Literature DB >> 19333631 |
E van Elzakker1, R Yahiaoui, C Visser, P Oostvogel, A Muller, Y-R Ho, J-J Wu, A van Belkum.
Abstract
The identification of markers for virulent group B streptococci (GBS) could guide prenatal prevention and intervention strategies. We compared the distribution of serotypes and potential pathogenicity islands (PPIs) between invasive and colonizing GBS. Colonizing and invasive strains from The Netherlands and Taiwan were serotyped. We used polymerase chain reaction (PCR) for the amplification of several new PPI markers. Several combinations of PPI-specific markers and serotypes were associated with invasiveness. For Dutch neonatal strains, a receiver operating characteristic (ROC) curve with serotype and five PPI markers showed an area under the curve (AUC) of 0.963 (95% confidence interval [CI] 0.935-0.99). For Taiwanese neonatal strains, serotype and four different PPI markers resulted in an ROC curve with an AUC of 0.894 (95% CI 0.826-0.963). PPI-specific and serological markers can distinguish local neonatal invasive GBS strains from colonizing ones. Apparently, there are clear regional differences in the GBS epidemiology and infection potential of clones.Entities:
Mesh:
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Year: 2009 PMID: 19333631 PMCID: PMC2723670 DOI: 10.1007/s10096-009-0726-4
Source DB: PubMed Journal: Eur J Clin Microbiol Infect Dis ISSN: 0934-9723 Impact factor: 3.267
Gene assignment of putative pathogenicity islands (PPIs) and their characteristics [20]
| Strain NEM 316a | Strain 2603VRb | Putative island | Characteristics |
|---|---|---|---|
| gbs0217 | sag0224 | I | Phage integrase family site-specific recombinase Cro/CI transcriptional regulator |
| gbs0367 | – | pNEM316-I (island III, VII, and VIII) | Near identical copies of a chromosomally integrated plasmid, designated pNEM316-1 |
| gbs0388 | – | ||
| gbs0628 | sag0645 | VI | The |
| gbs1073 | sag1038 | IX | A homolog to a two-component regulatory system |
| gbs1120 | − | X | A transferase |
| gbs1306 | sag1233 | XII | The |
| gbs1987 | sag2029 | XIII | Genes with unknown functions in NEM316/2603VR |
| − | sag0915 | Tn916 | Mobile element in 2603VR |
aSerotype III
bSerotype V
Prevalence of genetic markers
| PPI | Gene/marker | D N Ia % ( | D Cb % ( | T N Ic % ( | T A Id % ( | T Ce % ( | ||||
|---|---|---|---|---|---|---|---|---|---|---|
| I | gbs0217/sag0224 | 38,6 | 41.3 | 32.6 | 33 | 27.6 | 0.767 | 0.589 | 0.504 | 0.088 |
| gbs 0227/sag0234 | 43.2 | 72.8 | 32.6 | 82 | 75.9 | 0.001g | <0.001h | 0.339 | 0.680 | |
| III, VII, VIII (pNEM316) | gbs0367 | 2.3 | 3.3 | 0 | 2 | 6.9 | 1.000 | 0.134 | 0.192 | nd |
| gbs0388 | 0 | 3.3 | 4.7 | 1 | 1.7 | 0.551 | 0.573 | 1.000 | nd | |
| VI | gbs628/sag0645 | 56.8 | 68.5 | 65.1 | 67 | 56.9 | 0.183 | 0.404 | 0.188 | 0.150 |
| gbs0660/sag0685 | 81.8 | 92.4 | 79.1 | 82 | 84.5 | 0.082 | 0.482 | 0.709 | 0.126 | |
| IX | gbs1073/sag1038 | 38.6 | 4.3 | 69.8 | 78 | 79.3 | < 0.0001i | 0.272 | 0.872 | <0.0001j |
| X | gbs1120 | 2.3 | 2.2 | 4.7 | 1 | 1.7 | 1.00 | 0.573 | 1.000 | nd |
| gbs1125 | 4.5 | 15.2 | 9.3 | 4 | 8.6 | 0.071 | 1.000 | 0.288 | 0.237 | |
| gbs1135 | 11.4 | 15.2 | 4.7 | 5 | 17.2 | 0.544 | 0.053 | 0.013k | 0.742 | |
| XII | gbs1306/sag1233 | 93.2 | 95.7 | 74.4 | 71 | 84.5 | 0.681 | 0.209 | 0.06 | 0.018l |
| gbs1313/sag1246 | 18.2 | 77.2 | 86.0 | 78 | 82.5 | <0.0001g | 0.655 | 0.492 | `0.411 | |
| XIII | gbs1987/sag2029 | 77.3 | 92.4 | 7.4 | 84 | 84.5 | 0.013g | 0.209 | 0.957 | 0.126 |
| Tn916 | sag915 | 38.6 | 55.4 | 65.1 | 59 | 43.1 | 0.067 | 0.028m | 0.047n | 0.141 |
aDutch neonatal invasive strains
bDutch colonizing strains
cTaiwanese neonatal invasive strains
dTaiwanese adult invasive strains
eTaiwanese colonizing strains
fP-values are calculated for the differences in the prevalence of genetic markers between groups. If the P-value is <0.05, the difference is considered to be significant. Groups of invasive strains are compared with colonizing strains from the same region
gLess prevalent in Dutch neonatal invasive strains
hLess prevalent in Taiwanese neonatal invasive strains
iMore prevalent in Dutch neonatal invasive strains
jMore prevalent in Taiwanese colonizing strains
kLess prevalent in Taiwanese adult invasive strains
lMore prevalent in Dutch colonizing strains
mMore prevalent in Taiwanese neonatal invasive strains
nMore prevalent in adult invasive strains
Prevalence of serotypes
| Serotype | D N Ia % ( | D Cb % ( | T N Ic % ( | T A Id % ( | T Ce% ( | ||||
|---|---|---|---|---|---|---|---|---|---|
| Ia | 13.6 | 26.1 | 11.6 | 18 | 22.4 | 0.101 | 0.161 | 0.482 | 0.611 |
| Ib | 0 | 6.5 | 4.7 | 14 | 8.6 | 0.177 | 0.696 | 0.327 | 0.750 |
| II | 0 | 13.0 | 0 | 6 | 3.4 | 0.009g | 0.506 | 0.711 | 0.049h |
| III | 75.0 | 21.7 | 79.1 | 23 | 32.8 | <0.0001i | <0.0001j | 0.169 | 0.134 |
| IV | 0 | 7.6 | 0 | 1 | 0 | 0.096 | − | 1.000 | 0.043h |
| V | 9.1 | 15.2 | 4.7 | 26 | 25.9 | 0.324 | 0.005k | 0.987 | 0.108 |
| VI | 0 | 7.6 | 0 | 3 | 3.4 | 0.096 | 0.506 | 1.000 | 0.483 |
aDutch neonatal invasive strains
bDutch colonizing strains
cTaiwanese neonatal invasive strains
dTaiwanese adult invasive strains
eTaiwanese colonizing strains
fP-values are calculated for the differences in serotypes between groups. If the P-value is <0.05, the difference is considered to be significant. Invasive strains are compared with colonizing strains from the same region
gLess prevalent in Dutch neonatal invasive strains
hMore prevalent in Dutch colonizing strains
iMore prevalent in Dutch neonatal invasive strains
jMore prevalent in Taiwanese neonatal invasive strains
kLess prevalent in Taiwanese neonatal invasive strains
Fig. 1Receiver operating characteristic (ROC) curves including both sensitivity and specificity estimates. Each curve is the regression line that summarizes the overall diagnostic accuracy. AUC = area under the curve, SE = standard error of AUC. a, b Dutch neonatal invasive strains. c, d Taiwanese neonatal invasive strains. e Taiwanese adult invasive strains. In a and c, the included variables are molecular markers and serotype. To establish the influence of markers alone, serotype was left out as a variable in b and d. For adult invasive strains, only one curve was constructed (e) because the serotype was not a relevant variable. a AUC: 0.963, SE: 0.014, 95% CI: 0.935–0.99, cutoff: 0.2055, sensitivity: 97.7%, specificity: 85.9%. Included variables are serotype, gbs1987/sag2029, gbs227/sag0234, gbs1073/sag1038, gbs1125, and gbs1313/sag1246. b AUC: 0.898, SE: 0.028, 95% CI: 0.844–0.952, cutoff: 0.351, sensitivity: 90.9%, specificity: 79.3%. Included variables as in a, except serotype. c AUC: 0.894, SE: 0.035, 95% CI: 0.826–0.963, cutoff: 0.3525, sensitivity: 93%, specificity: 75.9%. Included variables are serotype, gbs1987/sag2029, gbs227/sag0234, gbs1135, and sag915. d AUC 0.823, SE: 0.044, 95% CI:0.738–0.909, cutoff: 0.388, sensitivity: 72.1%, specificity: 82.8%. Variables as in c, except serotype. e AUC: 0.657, SE: 0.046, 95% CI: 0.567–0.747, cutoff: 0.5495, sensitivity: 71.4%, specificity: 53.4%. Included variables are sag915, gbs1306/sag1233, and gbs1135
Overview of known markers to potentially identify the invasive subgroup, comparing the results of our study with those of previous works
| Ref. | Origin of the strains | Subgroups ( | Method | Marker -a or +b | |
|---|---|---|---|---|---|
| Neonatal invasive (EOD and LOD) and vaginal and rectal colonizing GBS from The Netherlands and Taiwan | NL invasive (44) | PCR and serotyping | {ST (II-, III+), gbs1987-, gbs227-, gbs1073+, gbs1125-, gbs1313- } | <0.05 | |
| TW invasive (43) | {ST (III+, V-), gbs1987-, gbs227-, gbs1135-, sag915+ } | <0.05 | |||
| Invasive strains from neonates, elderly and pregnant women | Invasive (269) | Selection of known and putative virulence genes, PCR | 0.23 | ||
| Anal, vaginal, throat, and urine from healthy individuals | Colonizing (152) | ns | |||
| ns | |||||
| ns | |||||
| <0.01 | |||||
| ns | |||||
| Neonatal meningitis isolates, EOD | Invasive (100) | Selection of known virulence genes, PCR | 0.002 | ||
| Colonizing isolates from cervix, vagina, anus | Colonizing (360) | ns | |||
| 0.09 | |||||
| ST Ia | 0.03 | ||||
| ST | 0.002 | ||||
| GBS from neonatal CSF (EOD and LOD), vagina pregnant women, and neonatal gastric fluid (colonizing) | Invasive phylogenetic subgroups I, II-ET11, II-ET12 (MLEE) (62) | RAPD, followed by PCR of a tRNA gene cluster | 1,2 kb fragment + | <0.0001 | |
| Non-invasive phylogenetic subgroup II (MLEE) (52 | +IS | <0.0001 | |||
| CSF neonates 1986–1990 | Invasive phylogenetic subgroups (MLEE) (63) | RAPD, followed by differential display of DNA and PCR of prophagic DNA | DNA fragment F5 + | 0.017 | |
| Vagina and gastric fluid neonates (colonizing) | Non-invasive phylogenetic subgroups (MLEE) (46) | DNA fragment F7 + | 0.007 | ||
| DNA fragment F10 + | <0.001 | ||||
| At least one fragment + | 0.002 | ||||
| GBS from neonatal CSF (EOD and LOD), vagina pregnant women, and neonatal gastric fluid (colonizing) | RAPD group A (virulent clone family) (38) | RAPD, primer A4 | 0.64 kbp fragment | <0.001 | |
| Not RAPD gr.A (76) | RAPD, primer AP42 | 1.2 kbp fragment - | <0.001 | ||
| RAPD, primer OPS16 | 2.4 kbp fragment + | <0.001 | |||
| GBS from neonatal CSF (EOD and LOD), vagina pregnant women, and neonatal gastric fluid (colonizing) | Invasive (54) | PFGE, | 183 kb fragment + | ns | |
| Colonizing (59) | 162 kb fragment + | <0.0001 | |||
| Quadruplet + | 0.009 | ||||
| Neonatal meningitis isolates, EOD and LOD, all ST III | Invasive (92) | PFGE, | ns | ||
| Ears and gastric fluid healthy neonates | Colonizing (37) | <0.0001 | |||
| ns | |||||
| ns | |||||
| IS | ns | ||||
| GBSi1 + | <0.0001 |
aAbsence of the marker(s) is associated with the specific virulent subgroup. The significance level of this association is expressed by the P-value
bPresence of the marker(s) is associated with the specific virulent subgroup. The significance level of this association is expressed by the P-value
cns means not significant (P > 0.05)
dDistribution of virulence genes among invasive and colonizing GBS. Smith et al. examined the distribution of eight known and putative virulence genes as a function of type of isolate on a heterogeneous collection of strains. With the exception of the pag (phage-associated) gene, appearing more often in colonizing isolates, and the spb1 gene, appearing slightly more often in invasive isolates, no difference was found in the distribution of the selected genes [22]. Manning et al. studied the presence of the rib and the bca and bac genes among colonizing and invasive isolates and found only marginally significant differences in frequency. The calculated sensitivity and specificity of these markers to identify virulent strains is generally low, except for some limited serotype–gene combinations [23]
eDistribution of RAPD fragments among virulent phylogenetically related lineages. With RAPD, Rolland et al. identified a fragment corresponding to a tRNA gene cluster [24]. van der Mee-Marquet et al. identified several prophagic DNA fragments that were significantly more prevalent in strains belonging to invasive MLEE-related subgroups of GBS [25]. Chatellier et al. demonstrated that, with four primers, neonatal invasive strains can be grouped into three predominant RAPD groups, corresponding to the same virulent MLEE lineages as found by van der Mee-Marquet et al. [26]
fPFGE fragments and virulence gene probes, distribution among virulent vs. colonizing (ST III) GBS. Rolland et al., using PFGE, revealed that isolates recovered from meningitis were clustered within three PFGE groups [27]. Bidet et al. found a significant association of a mobile genetic element (GBSi1) and a 15 kb fragment bearing the neuA virulence gene with meningitis isolates [28]