Literature DB >> 19333238

mzAPI: a new strategy for efficiently sharing mass spectrometry data.

Manor Askenazi, Jignesh R Parikh, Jarrod A Marto.   

Abstract

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Year:  2009        PMID： 19333238      PMCID： PMC2691659          DOI： 10.1038/nmeth0409-240

Source DB:  PubMed          Journal:  Nat Methods        ISSN： 1548-7091            Impact factor:   28.547


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  4 in total

Review 1.  What is mzXML good for?

Authors:  Simon M Lin; Lihua Zhu; Andrew Q Winter; Maciek Sasinowski; Warren A Kibbe
Journal:  Expert Rev Proteomics       Date:  2005-12       Impact factor: 3.940

2.  A bright millisecond radio burst of extragalactic origin.

Authors:  D R Lorimer; M Bailes; M A McLaughlin; D J Narkevic; F Crawford
Journal:  Science       Date:  2007-09-27       Impact factor: 47.728

3.  mzML: a single, unifying data format for mass spectrometer output.

Authors:  Eric Deutsch
Journal:  Proteomics       Date:  2008-07       Impact factor: 3.984

4.  A common open representation of mass spectrometry data and its application to proteomics research.

Authors:  Patrick G A Pedrioli; Jimmy K Eng; Robert Hubley; Mathijs Vogelzang; Eric W Deutsch; Brian Raught; Brian Pratt; Erik Nilsson; Ruth H Angeletti; Rolf Apweiler; Kei Cheung; Catherine E Costello; Henning Hermjakob; Sequin Huang; Randall K Julian; Eugene Kapp; Mark E McComb; Stephen G Oliver; Gilbert Omenn; Norman W Paton; Richard Simpson; Richard Smith; Chris F Taylor; Weimin Zhu; Ruedi Aebersold
Journal:  Nat Biotechnol       Date:  2004-11       Impact factor: 54.908
  4 in total
  45 in total

1.  A Chemoproteomic Strategy for Direct and Proteome-Wide Covalent Inhibitor Target-Site Identification.

Authors:  Christopher M Browne; Baishan Jiang; Scott B Ficarro; Zainab M Doctor; Jared L Johnson; Joseph D Card; Sindhu Carmen Sivakumaren; William M Alexander; Tomer M Yaron; Charles J Murphy; Nicholas P Kwiatkowski; Tinghu Zhang; Lewis C Cantley; Nathanael S Gray; Jarrod A Marto
Journal:  J Am Chem Soc       Date:  2018-12-20       Impact factor: 15.419

2.  An efficient data format for mass spectrometry-based proteomics.

Authors:  Anuj R Shah; Jennifer Davidson; Matthew E Monroe; Anoop M Mayampurath; William F Danielson; Yan Shi; Aaron C Robinson; Brian H Clowers; Mikhail E Belov; Gordon A Anderson; Richard D Smith
Journal:  J Am Soc Mass Spectrom       Date:  2010-07-07       Impact factor: 3.109

3.  Discovery of Covalent CDK14 Inhibitors with Pan-TAIRE Family Specificity.

Authors:  Fleur M Ferguson; Zainab M Doctor; Scott B Ficarro; Christopher M Browne; Jarrod A Marto; Jared L Johnson; Tomer M Yaron; Lewis C Cantley; Nam Doo Kim; Taebo Sim; Matthew J Berberich; Marian Kalocsay; Peter K Sorger; Nathanael S Gray
Journal:  Cell Chem Biol       Date:  2019-03-28       Impact factor: 8.116

4.  Online nanoflow RP-RP-MS reveals dynamics of multicomponent Ku complex in response to DNA damage.

Authors:  Feng Zhou; Job D Cardoza; Scott B Ficarro; Guillaume O Adelmant; Jean-Bernard Lazaro; Jarrod A Marto
Journal:  J Proteome Res       Date:  2010-10-27       Impact factor: 4.466

5.  A mass spectrometry proteomics data management platform.

Authors:  Vagisha Sharma; Jimmy K Eng; Michael J Maccoss; Michael Riffle
Journal:  Mol Cell Proteomics       Date:  2012-05-18       Impact factor: 5.911

6.  A robust error model for iTRAQ quantification reveals divergent signaling between oncogenic FLT3 mutants in acute myeloid leukemia.

Authors:  Yi Zhang; Manor Askenazi; Jingrui Jiang; C John Luckey; James D Griffin; Jarrod A Marto
Journal:  Mol Cell Proteomics       Date:  2009-12-17       Impact factor: 5.911

7.  mzResults: an interactive viewer for interrogation and distribution of proteomics results.

Authors:  James T Webber; Manor Askenazi; Jarrod A Marto
Journal:  Mol Cell Proteomics       Date:  2011-01-25       Impact factor: 5.911

8.  mzServer: web-based programmatic access for mass spectrometry data analysis.

Authors:  Manor Askenazi; James T Webber; Jarrod A Marto
Journal:  Mol Cell Proteomics       Date:  2011-01-25       Impact factor: 5.911

9.  Covalent targeting of remote cysteine residues to develop CDK12 and CDK13 inhibitors.

Authors:  Tinghu Zhang; Nicholas Kwiatkowski; Calla M Olson; Sarah E Dixon-Clarke; Brian J Abraham; Ann K Greifenberg; Scott B Ficarro; Jonathan M Elkins; Yanke Liang; Nancy M Hannett; Theresa Manz; Mingfeng Hao; Bartlomiej Bartkowiak; Arno L Greenleaf; Jarrod A Marto; Matthias Geyer; Alex N Bullock; Richard A Young; Nathanael S Gray
Journal:  Nat Chem Biol       Date:  2016-08-29       Impact factor: 15.040

10.  Library dependent LC-MS/MS acquisition via mzAPI/Live.

Authors:  James T Webber; Manor Askenazi; Scott B Ficarro; Max A Iglehart; Jarrod A Marto
Journal:  Proteomics       Date:  2013-05       Impact factor: 3.984
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