Literature DB >> 19329581

Demequina lutea sp. nov., isolated from a high Arctic permafrost soil.

Kai Waldemar Finster1, Rodney Andrew Herbert, Kasper Urup Kjeldsen, Peter Schumann, Bente Aagaard Lomstein.   

Abstract

Two Gram-stain-positive, pigmented, non-motile, non-spore-forming, pleomorphic, rod-shaped bacteria (strains SV45(T) and SV47), isolated from a permafrost soil collected from the Adventdalen valley, Spitsbergen, northern Norway, have been characterized taxonomically using a polyphasic approach. Phylogenetic analysis based on 16S rRNA gene sequences revealed that the two permafrost isolates formed a distinct phyletic line within the suborder Micrococcineae of the order Actinomycetales. DNA-DNA hybridization analyses indicate that strains SV45(T) and SV47 are closely related (60-69 % relatedness) and belong to the same species, although they show slightly different colony pigmentation. The closest phylogenetic neighbour was Demequina aestuarii JC2054(T), with 96 % 16S rRNA gene sequence similarity. Optimum growth of SV45(T) and SV47 occurred aerobically in the absence of NaCl, but both isolates tolerated up to 2 % NaCl (w/v) in the growth medium. Growth under anaerobic conditions was slow and weak. The peptidoglycan of both isolates was of the A4beta type with l-ornithine as the diamino acid and serine as a component of the interpeptide bridge with either d-aspartate (SV45(T)) or d-glutamate (SV47) as the N-terminal amino acid. The major fatty acids present in both isolates were C(15 : 0) (3.2-8.6 %), iso-C(16 : 0) (5.0-8.9 %), anteiso-C(15 : 0) (59.4-61.5 %), anteiso-C(17 : 0) (4.1-8.8 %) and anteiso-C(15 : 1) (4.4-6.4 %). Isoprenoid quinones were present at exceptionally low levels in both isolates, and only demethylmenaquinone DMK-9(H(4)) could be identified with any degree of confidence. Phylogenetic analysis and differences in physiological and biochemical characteristics between the strains and Demequina aestuarii JC2054(T) indicate that these isolates belong to a novel species within the genus Demequina, for which the name Demequina lutea sp. nov. is proposed. The type strain is SV45(T) (=LMG 24795(T) =DSM 19970(T)).

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Year:  2009        PMID: 19329581     DOI: 10.1099/ijs.0.004929-0

Source DB:  PubMed          Journal:  Int J Syst Evol Microbiol        ISSN: 1466-5026            Impact factor:   2.747


  4 in total

1.  Genome-Based Taxonomic Classification of the Phylum Actinobacteria.

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Journal:  Front Microbiol       Date:  2018-08-22       Impact factor: 5.640

Review 2.  The microbial ecology of permafrost.

Authors:  Janet K Jansson; Neslihan Taş
Journal:  Nat Rev Microbiol       Date:  2014-05-12       Impact factor: 60.633

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Authors:  Moriyuki Hamada; Natsuko Ichikawa; Akio Oguchi; Hisayuki Komaki; Tomohiko Tamura; Nobuyuki Fujita
Journal:  Genome Announc       Date:  2015-04-16

4.  Actinobacterial Diversity in the Sediments of Five Cold Springs on the Qinghai-Tibet Plateau.

Authors:  Jian Yang; Xiaoyan Li; Liuqin Huang; Hongchen Jiang
Journal:  Front Microbiol       Date:  2015-11-30       Impact factor: 5.640

  4 in total

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