Literature DB >> 19328791

Glycoproteomics: past, present and future.

Bérangère Tissot1, Simon J North, Alessio Ceroni, Poh-Choo Pang, Maria Panico, Floriana Rosati, Antonietta Capone, Stuart M Haslam, Anne Dell, Howard R Morris.   

Abstract

This invited paper reviews the study of protein glycosylation, commonly known as glycoproteomics, beginning with the origins of the subject area in the early 1970s shortly after mass spectrometry was first applied to protein sequencing. We go on to describe current analytical approaches to glycoproteomic analyses, with exemplar projects presented in the form of the complex story of human glycodelin and the characterisation of blood group H eptitopes on the O-glycans of gp273 from Unio elongatulus. Finally, we present an update on the latest progress in the field of automated and semi-automated interpretation and annotation of these data in the form of GlycoWorkBench, a powerful informatics tool that provides valuable assistance in unravelling the complexities of glycoproteomic studies.

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Year:  2009        PMID: 19328791      PMCID: PMC2753369          DOI: 10.1016/j.febslet.2009.03.049

Source DB:  PubMed          Journal:  FEBS Lett        ISSN: 0014-5793            Impact factor:   4.124


  43 in total

Review 1.  Lectins: past, present and future.

Authors:  Nathan Sharon
Journal:  Biochem Soc Trans       Date:  2008-12       Impact factor: 5.407

2.  Neisseria gonorrhoeae type IV pili undergo multisite, hierarchical modifications with phosphoethanolamine and phosphocholine requiring an enzyme structurally related to lipopolysaccharide phosphoethanolamine transferases.

Authors:  Finn Erik Aas; Wolfgang Egge-Jacobsen; Hanne C Winther-Larsen; Cecilia Løvold; Paul G Hitchen; Anne Dell; Michael Koomey
Journal:  J Biol Chem       Date:  2006-07-05       Impact factor: 5.157

3.  Sialic acid capping of CD8beta core 1-O-glycans controls thymocyte-major histocompatibility complex class I interaction.

Authors:  Anne Marie Moody; Simon J North; Bruce Reinhold; Steven J Van Dyken; Mark E Rogers; Maria Panico; Anne Dell; Howard R Morris; Jamey D Marth; Ellis L Reinherz
Journal:  J Biol Chem       Date:  2002-11-28       Impact factor: 5.157

4.  Glycan family analysis for deducing N-glycan topology from single MS.

Authors:  David Goldberg; Marshall Bern; Simon J North; Stuart M Haslam; Anne Dell
Journal:  Bioinformatics       Date:  2008-12-10       Impact factor: 6.937

5.  Efficacy of glycoprotein enrichment by microscale lectin affinity chromatography.

Authors:  Milan Madera; Benjamin Mann; Yehia Mechref; Milos V Novotny
Journal:  J Sep Sci       Date:  2008-08       Impact factor: 3.645

6.  Gp273, the ligand molecule for sperm-egg interaction in the bivalve mollusk, Unio elongatulus, binds to and induces acrosome reaction in human spermatozoa through a protein kinase C-dependent pathway.

Authors:  S Delle Monache; F Flori; C Della Giovampaola; A Capone; G B La Sala; F Rosati; R Colonna; C Tatone; R Focarelli
Journal:  Biol Reprod       Date:  2003-07-30       Impact factor: 4.285

7.  Glycomics and proteomics analyses of mouse uterine luminal fluid revealed a predominance of Lewis Y and X epitopes on specific protein carriers.

Authors:  Chu-Wei Kuo; Chin-Mei Chen; Ying-Chu Lee; Sin-Tak Chu; Kay-Hooi Khoo
Journal:  Mol Cell Proteomics       Date:  2008-10-21       Impact factor: 5.911

8.  Amino acid sequence and post-translational modification of human interleukin 2.

Authors:  R J Robb; R M Kutny; M Panico; H R Morris; V Chowdhry
Journal:  Proc Natl Acad Sci U S A       Date:  1984-10       Impact factor: 11.205

9.  A novel sialylated N-acetylgalactosamine-containing oligosaccharide is the major complex-type structure present in Bowes melanoma tissue plasminogen activator.

Authors:  A L Chan; H R Morris; M Panico; A T Etienne; M E Rogers; P Gaffney; L Creighton-Kempsford; A Dell
Journal:  Glycobiology       Date:  1991-03       Impact factor: 4.313

10.  Immunoglobulins against gp273, the ligand for sperm-egg interaction in the mollusc bivalve Unio elongatulus, are directed against charged O-linked oligosaccharide chains bearing a Lewis-like structure and interact with epitopes of the human zona pellucida.

Authors:  Riccardo Focarelli; Antonietta Capone; Leonardo Ermini; Francesca Del Buono; Giovanni Battista La Sala; Marcella Balasini; Floriana Rosati
Journal:  Mol Reprod Dev       Date:  2003-02       Impact factor: 2.609

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  26 in total

1.  Development of serum glycoproteomic profiling technique; simultaneous identification of glycosylation sites and site-specific quantification of glycan structure changes.

Authors:  Koji Ueda; Sachiko Takami; Naomi Saichi; Yataro Daigo; Nobuhisa Ishikawa; Nobuoki Kohno; Masaru Katsumata; Akio Yamane; Minoru Ota; Taka-Aki Sato; Yusuke Nakamura; Hidewaki Nakagawa
Journal:  Mol Cell Proteomics       Date:  2010-09       Impact factor: 5.911

Review 2.  Proteoglycomics: recent progress and future challenges.

Authors:  Mellisa Ly; Tatiana N Laremore; Robert J Linhardt
Journal:  OMICS       Date:  2010-08

3.  A comparison of energy-resolved vibrational activation/dissociation characteristics of protonated and sodiated high mannose N-glycopeptides.

Authors:  Forouzan Aboufazeli; Venkata Kolli; Eric D Dodds
Journal:  J Am Soc Mass Spectrom       Date:  2015-01-13       Impact factor: 3.109

4.  The ammonia-catalyzed release of glycoprotein N-glycans.

Authors:  Chengjian Wang; Meifang Yang; Xi Gao; Cheng Li; Zihua Zou; Jianli Han; Linjuan Huang; Zhongfu Wang
Journal:  Glycoconj J       Date:  2018-09-08       Impact factor: 2.916

Review 5.  Plasma membrane proteomics and its application in clinical cancer biomarker discovery.

Authors:  Rikke Leth-Larsen; Rikke R Lund; Henrik J Ditzel
Journal:  Mol Cell Proteomics       Date:  2010-04-08       Impact factor: 5.911

Review 6.  A case for protein-level and site-level specificity in glycoproteomic studies of disease.

Authors:  Katherine N Schumacher; Eric D Dodds
Journal:  Glycoconj J       Date:  2016-03-23       Impact factor: 2.916

Review 7.  Analysis of carbohydrates and glycoconjugates by matrix-assisted laser desorption/ionization mass spectrometry: an update for 2009-2010.

Authors:  David J Harvey
Journal:  Mass Spectrom Rev       Date:  2014-05-26       Impact factor: 10.946

8.  Tandem mass spectrometry of heparan sulfate negative ions: sulfate loss patterns and chemical modification methods for improvement of product ion profiles.

Authors:  Xiaofeng Shi; Yu Huang; Yang Mao; Hicham Naimy; Joseph Zaia
Journal:  J Am Soc Mass Spectrom       Date:  2012-07-24       Impact factor: 3.109

Review 9.  Glycomics: revealing the dynamic ecology and evolution of sugar molecules.

Authors:  Stevan A Springer; Pascal Gagneux
Journal:  J Proteomics       Date:  2015-11-25       Impact factor: 4.044

10.  Comparing transcription rate and mRNA abundance as parameters for biochemical pathway and network analysis.

Authors:  Brewster Hayles; Sailu Yellaboina; Degeng Wang
Journal:  PLoS One       Date:  2010-03-26       Impact factor: 3.240

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