Literature DB >> 26626628

Glycomics: revealing the dynamic ecology and evolution of sugar molecules.

Stevan A Springer1, Pascal Gagneux2.   

Abstract

Sugars are the most functionally and structurally diverse molecules in the biological world. Glycan structures range from tiny single monosaccharide units to giant chains thousands of units long. Some glycans are branched, their monosaccharides linked together in many different combinations and orientations. Some exist as solitary molecules; others are conjugated to proteins and lipids and alter their collective functional properties. In addition to structural and storage roles, glycan molecules participate in and actively regulate physiological and developmental processes. Glycans also mediate cellular interactions within and between individuals. Their roles in ecology and evolution are pivotal, but not well studied because glycan biochemistry requires different methods than standard molecular biology practice. The properties of glycans are in some ways convenient, and in others challenging. Glycans vary on organismal timescales, and in direct response to physiological and ecological conditions. Their mature structures are physical records of both genetic and environmental influences during maturation. We describe the scope of natural glycan variation and discuss how studying glycans will allow researchers to further integrate the fields of ecology and evolution.
Copyright © 2015 Elsevier B.V. All rights reserved.

Entities:  

Keywords:  Cellular ecology; Glycans; Glycoconjugates; Natural variation; Polymorphism

Mesh:

Substances:

Year:  2015        PMID: 26626628      PMCID: PMC4762723          DOI: 10.1016/j.jprot.2015.11.022

Source DB:  PubMed          Journal:  J Proteomics        ISSN: 1874-3919            Impact factor:   4.044


  93 in total

Review 1.  Vertebrate protein glycosylation: diversity, synthesis and function.

Authors:  Kelley W Moremen; Michael Tiemeyer; Alison V Nairn
Journal:  Nat Rev Mol Cell Biol       Date:  2012-06-22       Impact factor: 94.444

2.  Endogenous cellulases in animals: isolation of beta-1, 4-endoglucanase genes from two species of plant-parasitic cyst nematodes.

Authors:  G Smant; J P Stokkermans; Y Yan; J M de Boer; T J Baum; X Wang; R S Hussey; F J Gommers; B Henrissat; E L Davis; J Helder; A Schots; J Bakker
Journal:  Proc Natl Acad Sci U S A       Date:  1998-04-28       Impact factor: 11.205

Review 3.  Neurological aspects of human glycosylation disorders.

Authors:  Hudson H Freeze; Erik A Eklund; Bobby G Ng; Marc C Patterson
Journal:  Annu Rev Neurosci       Date:  2015-04-02       Impact factor: 12.449

4.  Retargeting pre-existing human antibodies to a bacterial pathogen with an alpha-Gal conjugated aptamer.

Authors:  Sascha A Kristian; John H Hwang; Bradley Hall; Emma Leire; John Iacomini; Robert Old; Uri Galili; Charles Roberts; Kary B Mullis; Mike Westby; Victor Nizet
Journal:  J Mol Med (Berl)       Date:  2015-05-05       Impact factor: 4.599

5.  Parallel evolution of a self-signal: humans and new world monkeys independently lost the cell surface sugar Neu5Gc.

Authors:  Stevan A Springer; Sandra L Diaz; Pascal Gagneux
Journal:  Immunogenetics       Date:  2014-08-16       Impact factor: 2.846

Review 6.  Modulation of glycan recognition by clustered saccharide patches.

Authors:  Miriam Cohen; Ajit Varki
Journal:  Int Rev Cell Mol Biol       Date:  2014       Impact factor: 6.813

Review 7.  Form and function of the glycocalyx on free cell surfaces.

Authors:  S Ito
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  1974-07-25       Impact factor: 6.237

Review 8.  Sweet spots in functional glycomics.

Authors:  James C Paulson; Ola Blixt; Brian E Collins
Journal:  Nat Chem Biol       Date:  2006-05       Impact factor: 15.040

9.  Dystroglycan and perlecan provide a basal cue required for epithelial polarity during energetic stress.

Authors:  Vincent Mirouse; Christina P Christoforou; Cornelia Fritsch; Daniel St Johnston; Robert P Ray
Journal:  Dev Cell       Date:  2009-01       Impact factor: 12.270

Review 10.  The secret life of viral entry glycoproteins: moonlighting in immune evasion.

Authors:  Jonathan D Cook; Jeffrey E Lee
Journal:  PLoS Pathog       Date:  2013-05-16       Impact factor: 6.823

View more
  8 in total

1.  Active site flexibility revealed in crystal structures of Parabacteroides merdae β-glucuronidase from the human gut microbiome.

Authors:  Michael S Little; Samantha M Ervin; William G Walton; Ashutosh Tripathy; Yongmei Xu; Jian Liu; Matthew R Redinbo
Journal:  Protein Sci       Date:  2018-10-27       Impact factor: 6.725

2.  Core 3 mucin-type O-glycan restoration in colorectal cancer cells promotes MUC1/p53/miR-200c-dependent epithelial identity.

Authors:  J Ye; X Wei; Y Shang; Q Pan; M Yang; Y Tian; Y He; Z Peng; L Chen; W Chen; R Wang
Journal:  Oncogene       Date:  2017-07-24       Impact factor: 9.867

Review 3.  Eukaryotic protein glycosylation: a primer for histochemists and cell biologists.

Authors:  Anthony Corfield
Journal:  Histochem Cell Biol       Date:  2016-12-23       Impact factor: 4.304

4.  De novo oviduct transcriptome of the moor frog Rana arvalis: a quest for maternal effect candidate genes.

Authors:  Longfei Shu; Jie Qiu; Katja Räsänen
Journal:  PeerJ       Date:  2018-08-16       Impact factor: 2.984

Review 5.  Absence of Neu5Gc and Presence of Anti-Neu5Gc Antibodies in Humans-An Evolutionary Perspective.

Authors:  Meghan O Altman; Pascal Gagneux
Journal:  Front Immunol       Date:  2019-04-30       Impact factor: 7.561

6.  Glycointeractome of Neisseria gonorrhoeae: Identification of Host Glycans Targeted by the Gonococcus To Facilitate Adherence to Cervical and Urethral Epithelial Cells.

Authors:  Christopher J Day; Kate L Seib; Evgeny A Semchenko; Arun V Everest-Dass; Freda E-C Jen; Tsitsi D Mubaiwa
Journal:  mBio       Date:  2019-07-09       Impact factor: 7.867

7.  Alteration of rhesus macaque serum N-glycome during infection with the human parasitic filarial nematode Brugia malayi.

Authors:  Laudine M C Petralia; Esrath Santha; Anna-Janina Behrens; D Linh Nguyen; Mehul B Ganatra; Christopher H Taron; Vishal Khatri; Ramaswamy Kalyanasundaram; Angela van Diepen; Cornelis H Hokke; Jeremy M Foster
Journal:  Sci Rep       Date:  2022-09-21       Impact factor: 4.996

8.  Using graph convolutional neural networks to learn a representation for glycans.

Authors:  Rebekka Burkholz; John Quackenbush; Daniel Bojar
Journal:  Cell Rep       Date:  2021-06-15       Impact factor: 9.995

  8 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.