Literature DB >> 19328769

Enzymatic synthesis of c-di-GMP using a thermophilic diguanylate cyclase.

Feng Rao1, Swathi Pasunooti, Yinglu Ng, Weichao Zhuo, Lishi Lim, Angeline Weixian Liu, Zhao-Xun Liang.   

Abstract

The cyclic dinucleotide c-di-GMP is a widespread bacterial messenger molecule with potential application as a therapeutic agent for treating bacterial infection. Current enzymatic synthesis of c-di-GMP using mesophilic diguanylate cyclase (DGC) proteins suffers from low production yield due to protein instability and strong product inhibition. Here we report the overexpression and characterization of a stand-alone thermophilic diguanylate cyclase domain (tDGC) protein with enhanced thermostability. The product inhibition that severely limited production yield was significantly alleviated by mutation of a conserved residue in the putative regulatory I-site. With the mutant tDGC, we demonstrated that hundreds of milligrams of c-di-GMP can be readily prepared by using the optimized procedures for enzymatic reaction and product purification. The thermophilic enzyme will be a valuable tool for other research laboratories for c-di-GMP synthesis as well as the preparation of c-di-GMP derivatives.

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Year:  2009        PMID: 19328769     DOI: 10.1016/j.ab.2009.03.031

Source DB:  PubMed          Journal:  Anal Biochem        ISSN: 0003-2697            Impact factor:   3.365


  36 in total

1.  Structural basis of differential ligand recognition by two classes of bis-(3'-5')-cyclic dimeric guanosine monophosphate-binding riboswitches.

Authors:  Kathryn D Smith; Carly A Shanahan; Emily L Moore; Aline C Simon; Scott A Strobel
Journal:  Proc Natl Acad Sci U S A       Date:  2011-04-25       Impact factor: 11.205

2.  Binding of cyclic diguanylate in the non-catalytic EAL domain of FimX induces a long-range conformational change.

Authors:  Yaning Qi; Mary Lay Cheng Chuah; Xueming Dong; Kailing Xie; Zhen Luo; Kai Tang; Zhao-Xun Liang
Journal:  J Biol Chem       Date:  2010-11-22       Impact factor: 5.157

3.  Differential analogue binding by two classes of c-di-GMP riboswitches.

Authors:  Carly A Shanahan; Barbara L Gaffney; Roger A Jones; Scott A Strobel
Journal:  J Am Chem Soc       Date:  2011-09-08       Impact factor: 15.419

4.  Crystallization and preliminary X-ray diffraction characterization of the XccFimX(EAL)-c-di-GMP and XccFimX(EAL)-c-di-GMP-XccPilZ complexes from Xanthomonas campestris.

Authors:  Yi-Ting Liao; Ko-Hsin Chin; Wei-Ting Kuo; Mary Lay-Cheng Chuah; Zhao-Xun Liang; Shan-Ho Chou
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2012-02-22

5.  Crystallization and preliminary X-ray diffraction studies of Xanthomonas campestris PNPase in the presence of c-di-GMP.

Authors:  Yu-Chuan Wang; Ko-Hsin Chin; Mary Lay-Cheng Chuah; Zhao-Xun Liang; Shan-Ho Chou
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2012-09-29

6.  Identification of small molecules inhibiting diguanylate cyclases to control bacterial biofilm development.

Authors:  Karthik Sambanthamoorthy; Chunyuan Luo; Nagarajan Pattabiraman; Xiarong Feng; Benjamin Koestler; Christopher M Waters; Thomas J Palys
Journal:  Biofouling       Date:  2013-10-11       Impact factor: 3.209

7.  Structural analyses unravel the molecular mechanism of cyclic di-GMP regulation of bacterial chemotaxis via a PilZ adaptor protein.

Authors:  Xin-Fu Yan; Lingyi Xin; Jackie Tan Yen; Yukai Zeng; Shengyang Jin; Qing Wei Cheang; Rachel Andrea Chea Yuen Fong; Keng-Hwee Chiam; Zhao-Xun Liang; Yong-Gui Gao
Journal:  J Biol Chem       Date:  2017-11-16       Impact factor: 5.157

8.  Identification of c-di-GMP derivatives resistant to an EAL domain phosphodiesterase.

Authors:  Carly A Shanahan; Barbara L Gaffney; Roger A Jones; Scott A Strobel
Journal:  Biochemistry       Date:  2013-01-03       Impact factor: 3.162

9.  YybT is a signaling protein that contains a cyclic dinucleotide phosphodiesterase domain and a GGDEF domain with ATPase activity.

Authors:  Feng Rao; Rui Yin See; Dongwei Zhang; Delon Chengxu Toh; Qiang Ji; Zhao-Xun Liang
Journal:  J Biol Chem       Date:  2009-11-09       Impact factor: 5.157

Review 10.  Cyclic di-GMP: the first 25 years of a universal bacterial second messenger.

Authors:  Ute Römling; Michael Y Galperin; Mark Gomelsky
Journal:  Microbiol Mol Biol Rev       Date:  2013-03       Impact factor: 11.056

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