Literature DB >> 19326927

Mössbauer, electron paramagnetic resonance, and theoretical studies of a carbene-based all-ferrous Fe4S4 cluster: electronic origin and structural identification of the unique spectroscopic site.

Mrinmoy Chakrabarti1, Liang Deng, R H Holm, Eckard Münck, Emile L Bominaar.   

Abstract

It is well established that the cysteinate-coordinated [Fe(4)S(4)] cluster of the iron protein of nitrogenase from Azotobacter vinelandii (Av2) can attain the all-ferrous core oxidation state. Mössbauer and electron paramagnetic resonance (EPR) studies have shown that the all-ferrous cluster has a ground-state spin S = 4 and an effective 3:1 site symmetry in the spin structure and (57)Fe quadrupole interactions. Recently, Deng and Holm reported the synthesis of [Fe(4)S(4)(Pr(i)(2)NHCMe(2))(4)],(2) (1; Pr(i)(2)NHCMe(2) = 1,3-diisopropyl-4,5-dimethylimidazol-2-ylidene) and showed that the all-ferrous carbene-coordinated cluster is amenable to physicochemical studies. Mössbauer and EPR studies of 1, reported here, reveal that the electronic structure of this complex is strikingly similar to that of the protein-bound cluster, suggesting that the ground-state spin and the 3:1 site ratio are consequences of spontaneous distortions of the cluster core. To gain insight into the origin of the peculiar ground state of the all-ferrous clusters in 1 and Av2, we have studied a theoretical model that is based on a Heisenberg-Dirac-van Vleck Hamiltonian whose exchange-coupling constants are a function of the Fe-Fe distances. By combining the exchange energies with the elastic deformation energies in the harmonic approximation, we obtain for a T(2) distortion a minimum with spin S = 4 and a C(3v) core structure in which one iron is unique and three irons are equivalent. This minimum has all of the spectroscopic and structural characteristics of the all-ferrous clusters of 1 and Av2. Our analysis maps the unique spectroscopic iron site to a specific site in the X-ray structure of the [Fe(4)S(4)](0) core both in complex 1 and in Av2.

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Year:  2009        PMID: 19326927      PMCID: PMC2745965          DOI: 10.1021/ic802192w

Source DB:  PubMed          Journal:  Inorg Chem        ISSN: 0020-1669            Impact factor:   5.165


  11 in total

1.  Crystal structure of the all-ferrous [4Fe-4S]0 form of the nitrogenase iron protein from Azotobacter vinelandii.

Authors:  P Strop; P M Takahara; H Chiu; H C Angove; B K Burgess; D C Rees
Journal:  Biochemistry       Date:  2001-01-23       Impact factor: 3.162

Review 2.  Synthetic analogues of the active sites of iron-sulfur proteins.

Authors:  P Venkateswara Rao; R H Holm
Journal:  Chem Rev       Date:  2004-02       Impact factor: 60.622

3.  Chemistry. Bringing stability to highly reduced iron-sulfur clusters.

Authors:  Eckard Münck; Emile L Bominaar
Journal:  Science       Date:  2008-09-12       Impact factor: 47.728

4.  Nitrogenase X: Mössbauer and EPR studies on reversibly oxidized MoFe protein from Azotobacter vinelandii OP. Nature of the iron centers.

Authors:  R Zimmermann; E Münck; W J Brill; V K Shah; M T Henzl; J Rawlings; W H Orme-Johnson
Journal:  Biochim Biophys Acta       Date:  1978-12-20

Review 5.  Combining Mössbauer spectroscopy with integer spin electron paramagnetic resonance.

Authors:  E Münck; K K Surerus; M P Hendrich
Journal:  Methods Enzymol       Date:  1993       Impact factor: 1.600

6.  Density functional and reduction potential calculations of Fe4S4 clusters.

Authors:  Rhonda A Torres; Timothy Lovell; Louis Noodleman; David A Case
Journal:  J Am Chem Soc       Date:  2003-02-19       Impact factor: 15.419

7.  Initial synthesis and structure of an all-ferrous analogue of the fully reduced [Fe4S4]0 cluster of the nitrogenase iron protein.

Authors:  Thomas A Scott; Curtis P Berlinguette; Richard H Holm; Hong-Cai Zhou
Journal:  Proc Natl Acad Sci U S A       Date:  2005-06-28       Impact factor: 11.205

8.  Flavodoxin hydroquinone reduces Azotobacter vinelandii Fe protein to the all-ferrous redox state with a S = 0 spin state.

Authors:  Thomas J Lowery; Phillip E Wilson; Bo Zhang; Jared Bunker; Roger G Harrison; Andrew C Nyborg; David Thiriot; Gerald D Watt
Journal:  Proc Natl Acad Sci U S A       Date:  2006-11-03       Impact factor: 11.205

9.  Spectroscopic evidence for an all-ferrous [4Fe-4S]0 cluster in the superreduced activator of 2-hydroxyglutaryl-CoA dehydratase from Acidaminococcus fermentans.

Authors:  Marcus Hans; Wolfgang Buckel; Eckhard Bill
Journal:  J Biol Inorg Chem       Date:  2008-05       Impact factor: 3.358

10.  Stabilization of fully reduced iron-sulfur clusters by carbene ligation: the [FenSn]0 oxidation levels (n = 4, 8).

Authors:  Liang Deng; R H Holm
Journal:  J Am Chem Soc       Date:  2008-07-01       Impact factor: 15.419

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  15 in total

1.  Low-spin pseudotetrahedral iron(I) sites in Fe₂(μ-S) complexes.

Authors:  John S Anderson; Jonas C Peters
Journal:  Angew Chem Int Ed Engl       Date:  2014-04-17       Impact factor: 15.336

Review 2.  Developments in the biomimetic chemistry of cubane-type and higher nuclearity iron-sulfur clusters.

Authors:  Sonny C Lee; Wayne Lo; R H Holm
Journal:  Chem Rev       Date:  2014-01-13       Impact factor: 60.622

Review 3.  Reactivity, Mechanism, and Assembly of the Alternative Nitrogenases.

Authors:  Andrew J Jasniewski; Chi Chung Lee; Markus W Ribbe; Yilin Hu
Journal:  Chem Rev       Date:  2020-03-04       Impact factor: 60.622

4.  Isolation and characterization of stable iron(I) sulfide complexes.

Authors:  Meghan M Rodriguez; Bryan D Stubbert; Christopher C Scarborough; William W Brennessel; Eckhard Bill; Patrick L Holland
Journal:  Angew Chem Int Ed Engl       Date:  2012-07-23       Impact factor: 15.336

5.  Trigonal Mn3 and Co3 clusters supported by weak-field ligands: a structural, spectroscopic, magnetic, and computational investigation into the correlation of molecular and electronic structure.

Authors:  Alison R Fout; Dianne J Xiao; Qinliang Zhao; T David Harris; Evan R King; Emily V Eames; Shao-Liang Zheng; Theodore A Betley
Journal:  Inorg Chem       Date:  2012-09-19       Impact factor: 5.165

Review 6.  Electron Transfer in Nitrogenase.

Authors:  Hannah L Rutledge; F Akif Tezcan
Journal:  Chem Rev       Date:  2020-01-30       Impact factor: 60.622

7.  Density functional theory study of an all ferrous 4Fe-4S cluster.

Authors:  Mrinmoy Chakrabarti; Eckard Münck; Emile L Bominaar
Journal:  Inorg Chem       Date:  2011-04-08       Impact factor: 5.165

8.  Characterization of [4Fe-4S] cluster vibrations and structure in nitrogenase Fe protein at three oxidation levels via combined NRVS, EXAFS, and DFT analyses.

Authors:  Devrani Mitra; Simon J George; Yisong Guo; Saeed Kamali; Stephen Keable; John W Peters; Vladimir Pelmenschikov; David A Case; Stephen P Cramer
Journal:  J Am Chem Soc       Date:  2013-02-11       Impact factor: 15.419

9.  Biomimetic chemistry of iron, nickel, molybdenum, and tungsten in sulfur-ligated protein sites.

Authors:  Stanislav Groysman; R H Holm
Journal:  Biochemistry       Date:  2009-03-24       Impact factor: 3.162

10.  The modular nature of all-ferrous edge-bridged double cubanes.

Authors:  Mrinmoy Chakrabarti; Liang Deng; R H Holm; Eckard Münck; Emile L Bominaar
Journal:  Inorg Chem       Date:  2010-02-15       Impact factor: 5.165

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