Literature DB >> 19325850

Phylogenetic biodiversity assessment based on systematic nomenclature.

Ross H Crozier1, Lisa J Dunnett, Paul-Michael Agapow.   

Abstract

Biodiversity assessment demands objective measures, because ultimately conservation decisions must prioritize the use of limited resources for preserving taxa. The most general framework for the objective assessment of conservation worth are those that assess evolutionary distinctiveness, e.g. Genetic (Crozier 1992) and Phylogenetic Diversity (Faith 1992), and Evolutionary History (Nee & May 1997). These measures all attempt to assess the conservation worth of any scheme based on how much of the encompassing phylogeny of organisms is preserved. However, their general applicability is limited by the small proportion of taxa that have been reliably placed in a phylogeny. Given that phylogenizaton of many interesting taxa or important is unlikely to occur soon, we present a framework for using taxonomy as a reasonable surrogate for phylogeny. Combining this framework with exhaustive searches for combinations of sites containing maximal diversity, we provide a proof-of-concept for assessing conservation schemes for systematized but un-phylogenised taxa spread over a series of sites. This is illustrated with data from four studies, on North Queensland flightless insects (Yeates et al. 2002), ants from a Florida Transect (Lubertazzi & Tschinkel 2003), New England bog ants (Gotelli & Ellison 2002) and a simulated distribution of the known New Zealand Lepidosauria (Daugherty et al. 1994). The results support this approach, indicating that species, genus and site numbers predict evolutionary history, to a degree depending on the size of the data set.

Entities:  

Keywords:  Evolutionary history; biodiversity; genetic diversity; phylogenetic diversity; phylogeny; systematic nomenclature

Year:  2007        PMID: 19325850      PMCID: PMC2658867     

Source DB:  PubMed          Journal:  Evol Bioinform Online        ISSN: 1176-9343            Impact factor:   1.625


Introduction

There is an instinctive and natural desire to preserve all species across the world, but in reality this “Noah’s Ark” approach (Mann & Plummer 1995) is impractical. Resources - financial and otherwise - are limited, the scale of the problem too vast (Agapow et al. 2004), and blanket protection policies are unlikely to be politically successful. Conservation is necessarily a question of economics and prioritization. How can time and money be spent most efficiently? Which species and populations should be targeted for preservation? What metrics can be used for measuring a species importance? Given the variety of organisms, sites and environments under consideration, it is initially unclear what quality should be measured by any metric of “conservation worth”. Many taxa have qualities that demand their preservation (e.g., being sources of valuable products or other economic benefits, scientific importance, or cultural value), but for the great majority their values are not so clear and are difficult to compare. Even when taxa are clearly “valuable”, questions of priority will arise, because the preservation of one taxon may conflict with that of another. Political success for any conservation scheme is more likely if the proposal is backed by objective measurable data. Objective criteria for the selection of sites and populations necessary to preserve single species chosen for conservation are relatively well developed (Frankham et al. 2002). But authoritative estimates of the number of species in the world are around 10 million (May 1992, Magurran 2005), so that it is clear that broad-scale solutions are needed rather than dealing with one species at a time. Ecologists typically regard species richness, the number of species in sites being considered for preservation, as the currency of conservation (Justus & Sarkar 2002, Gaston & Spicer 2004). The consideration of species numbers alone may, however, be insufficient, because of such factors as general imperfect taxonomic knowledge and variation in the level of this knowledge from one group to another. For some time therefore it has been suggested that the phylogenetic distinctiveness of species be taken into account (reviewed by Crozier (1997) and by Mace et al. (2003)), a point of view elegantly encapsulated by Wilson (1992) when he defined biodiversity as the information content in the world’s genomes. The sense of this view is illustrated by the east African great lakes. Some of these are home to more than 1,000 species of cichlid fishes which appear to have evolved over a very short evolutionary time (Meyer 1993). Naively relying on species number alone would value this group more than the ungulates, primates and carnivores combined. Using an approach that weights species by their evolutionary distinctiveness returns the cichlids to a value that intuitively seems more correct and undistorted by “cheap” species. Early applications of phylogeny to conservation relied purely on topology (reviewed by Crozier (1997)), but the much greater information content in branch-length metrics (recall the cichlid example above) led to their more widespread use and development (Crozier 1992, Faith 1992). Two dimensions can be discerned. One distinction is between measures that consider only the tree connecting the species of interest, as against measures that include the root of the tree connecting the species studied to the rest of life. The other considers the lengths of evolutionary branches (e.g., number of substitutions), as against taking account of saturation of differences (e.g., number of positions with different nucleotides). For example, as two DNA sequences diverge following speciation or gene duplication, differences will accumulate as substitutions occur. With time, substitutions will tend to occur at the same positions as earlier ones, so that the rate of divergence slows even though the rate of evolution does not, a distinction well brought out by the phrase of DeSalle et al. (1987) that eventually Hawaiian Drosophila cease to diverge even while continuing to evolve rapidly. Naturally, saturation occurs for more than DNA sequences–birds and fruit flies continue to evolve, but few would think that they are still becoming more different from each other. “Phylogenetic diversity” (PD) measures retained diversity as the length of tree retained between the group of interest without taking saturation into account (Faith 1992): where n is the number of species and dk, is the length of branch k in the tree. “Genetic diversity” (GD) resembles PD but takes saturation into account (Crozier 1992). Specifically, GD estimates the probability that the set of taxa preserves more than one allele per site: where pk is the proportion of sites different in state at the two ends of branch, hence 0 ≤ pk ≤ 1. For molecular data, dk is derived from pk according to one or other of the models of sequence evolution. “Evolutionary history” (EH) is similar to PD but includes the connection of the subtree to the rest of life (Nee & May 1997), by always including the node at the root. For symmetry we define a measure “Genetic history” (GH) which uses (2) above but always includes the root node in calculations, thus resembling EH. PD and GD thus deal with unrooted trees whereas EH and GD require rooted ones. Evolutionary history is attractive compared to PD because the analysis then preserves the context within the rest of life, and is appropriate for this study because of the non-molecular nature of the data. It has been a truism that conservation of habitats, with thousands or more species each, is preferable to concentrating on conserving particular species, necessarily small in number. The phylogenetic approach goes further, and asks about the evolutionary distinctiveness of species to be conserved. Phylogenetic methods involving whole communities have been applied to aquatic eukaryotic microbes using denaturing gradient gel electrophoresis of total extracted environmental DNA (van Hannen et al. 1998) and to subterranean bacteria via 16S rDNA sequences (Crozier et al. 1999). There is, however, a major impediment to a more general application of phylogenetic methods to conservation, and that is that the vast majority of groups lack complete phylogenies and this situation is unlikely to be corrected in the near future. A workaround for this problem already exists but has yet to be applied to conservation biology problems. Systematists generally try to make the arrangement of species into taxa mirror the topology of an inferred evolutionary tree, and the various classificatory levels similarly reflect the systematist’s judgement as to the degree of difference. Thus, surrogate phylogenies can be inferred from systematic nomenclature, and these phylogenies applied in biodiversity assessment. We here illustrate this method and, using species by site (location) data from four other studies, demonstrate its application using multi-platform computer programs. Estimates of confidence in biodiversity estimates are desirable when they can be made (Crozier 1997). Where surveys are not claimed to yield complete data, the survey data could be used to estimate statistical sufficiency, such as by using bootstrap or jackknife methods to derive confidence limits for EH, PD, GD or GH, and sample coverage methods (Chao & Lee 1992, Chao 2004) to obtain confidence limits for species richness. The entities used for such estimates will differ between groups. For example for social insects the correct unit is closer to the number of colonies (Wilson 1963, Pamilo & Crozier 1997, Chapman & Bourke 2001) because these better approximate the number of reproductives than does the number of sterile or infertile workers. In turn, the number of colonies of a species is approximated by the number of pitfall traps with its workers, rather than the absolute number of workers. Such measures are available in one of the programs discussed here, MeSA, and we discuss their use below.

Methods

Systematic nomenclature is used to infer a phylogeny of the species under consideration. A branch of equal length is allowed for each level in the hierarchy. An example is shown for a selection of social bees with the systematic nomenclature shown in Table 1, yielding the phylogeny of Figure 1.
Table 1

Systematic nomenclature for some social bees (Michener 2000).

SubfamilyTribeGenusSpecies
ApinaeApiniApismellifera
dorsata
MeliponiniMeliponabeecheii
Trigonahypogea
Figure 1

Phylogeny of some social bees inferred from the systematic nomenclature shown in Table 1.

The program TreeMaker allows the conversion of systematic nomenclature into an inferred phylogeny (or the importing of an actual phylogeny, if known) and the recording of the presence of the various species across collection sites, either as presence or absence or as abundance data. Branch lengths can either be one for each change of systematic level, or the distance from the root of the tree to the tips can be divided equally. Biodiversity for different combinations of sites is then determined by the species and resultant phylogeny that would be preserved if the sites are retained, according to whichever metric (e.g. PD, GD, GH or EH) is used. The absolute value of the preserved biodiversity varies with the metric used, but the ranks of combinations of sites are the same (Krajewski 1994) and there is for any particular data set (e.g., that of Crozier et al. (1999)) a simple interconversion between PD and GD unique to that data set. The absolute values can be important in intuitive evaluations - for example EH will tend to indicate that more biodiversity is preserved than does PD for the same data. We have used EH in our calculations here. For the set of bees, a set with Apis mellifera and A. dorsata preserved will have an EH of 4 and one which also preserves Melipona beechei one of 7 (the PD values of these sets are 2 and 7). The biodiversity preserved by conserving a set of sites is the EH of the species preserved. The program MeSA allows an exhaustive search of combinations of sites, calculating the species richness and EH (and other measures if desired, such as various estimates of species diversity and complementarity) of each combination. Confidence limits for species richness are asymmetric ones obtained via sample coverage methods. For example the estimator Chao84 (Chao 1984) uses information on the abundance of species which are rare but present to estimate the number of species which are rare but absent. Confidence limits for the diversity measure used in an analysis (e.g., EH) are obtained by standard jackknife and bootstrap methods, namely by subsampling from the observations seen in a combination and determining EH for each subsample (see Sokal and Rohlf (1995) for a review). Our implementation of jack-knifing followed standard practice, with each observation being omitted in turn to create a sub-sample. The algorithm for converting systematic nomenclature into an inferred phylogeny is implemented in two freely available programs, both called TreeMaker. The first is a Java program storing its data in an SQL database, and is available from http://homes.jcu.edu.au/~jc125033/Treemaker.htm. The second, available in Windows and Macintosh versions, stores its data in a structured format in files and is available from http://www.agapow.net/software/treemaker. MeSA is available from http://www.agapow.net/software/mesa. We used four data sets to explore the properties of our approach. The first of these example data sets contains information on the presence or absence of 273 species of flightless insects in 86 genera from 14 North Queensland localities resulting from a long-running Queensland Museum study directed by G. E. Monteith (Yeates et al. 2002). The tree inferred from systematics is given in the Appendix as a NEXUS file readable by TREEVIEW X. The second data set comes from a transect surveying the occurrences of northern Florida ants in a longleaf pine habitat, involving 72 species in 24 genera from 12 sites (Lubertazzi & Tschinkel 2003). The third data set stems from a study of New England bog ants (Gotelli & Ellison 2002) using an updated data set recording abundances of 34 species at 22 localities. The fourth data set was inspired by the discovery of a second species of the genus Sphenodon, which as the sister group to all other lepidosaurs is highly isolated phylogenetically (Daugherty et al. 1990, May 1990). Sphenodon is now largely limited to sites lacking introduced rats, with the rate of loss dependent on the particular invasive rat species (C. E. Daugherty, pers. comm.), rendering problematic any examination of the impact of Sphenodon on the conservation worth of sites. We therefore used the list of New Zealand lepidosaurs (Sphenodon and lizards) given by Daugherty et al. (1994), comprising 62 species placed in five genera, and simulated a set of 15 sites. Each species occurs three times and these occurrences were distributed at random to the 15 sites. The phylogenetic trees and occurrences at sites for the four data sets are given in NEXUS files in the Appendix. For each dataset, all possible combinations of included sites were generated. From the resultant ensemble of sites the genera, species and EH preserved were calculated. These analyses were performed by MeSA. Including the set of all sites, there are 16,383 combinations for the North Queensland Flightless Insects (NQFI) data, 4,095 for the Florida ants (FLA) data, 4,194,303 for the New England bog ants (NEBA) data and 32,767 for the New Zealand Lepidosauria (NZL) data. All the NQFI and FLA data can be meaningfully graphed, but it was necessary to sample from the NEBA and NZL results to yield a more tractable number of points, chosen to be 20,000. In order to investigate the effects on EH of phylogenetically divergent species, for each data set we distinguished between site combination-shaving remarkably divergent taxa and those without. The impact of a species on EH is expected to reflect the length of the branch connecting it to the rest of the tree (Crozier 1992, Faith 1992). For the NQFI data we selected Austrovelia queenslandica (abbreviated Austrovelia AV01 in the NEXUS file), the sole member of the Mesoveliidae in this data set, for FLA we selected Myrmecina americana, sole representative of its tribe, for the NEBA data we selected Amblyopone pallipes, sole member of its subfamily in this ant data set, and for NZL we selected the genus Sphenodon. To illustrate the use of confidence limit calculations, we used the Chao84 estimator for the number of species and its confidence limit, and for estimating the confidence limits for EH we estimated its standard error (SE) using the jackknife and derived confidence limits as 1.96 × SE. We used the NEBA data set for this demonstration; but we caution that that although the data are of the right form for the calculation they represent capture records of individual ants, not colonies as we have argued above would be more appropriate. Regression analyses were made using Statview 4.5 (Abacus Concepts).

Results

Graphs of species number and preserved evolutionary history (figure 2) show a strong relationship between these quantities. In every case there is a strong tendency for site combinations with the divergent taxa selected to preserve more evolutionary history than combinations with the same number of species but lacking these divergent taxa.
Figure 2

Relationships between species richness, generic richness, number of sites and evolutionary history preserved, and between the number of genera and number of species preserved, for the data sets of the flightless insects of North Queensland (A–D), Florida ants (E–H), New England bog ants (I–L) and New Zealand lepidosaurs (M–P). Where applicable, combinations of sites preserving a selected phylogenetically divergent taxon are given in red and others in black; the rare taxa are Austrovelia queenslandica (A–C), Myrmecina americana (E–G), Amblyopone pallipes (I–K) and the genus Sphenodon (M–O).

The number of genera is predictive of evolutionary history preserved (figure 2) but with the effect most marked when the number of genera is large (as in the NQFI data set). The relationship between evolutionary history preserved and the number of sites is often not a close one, but there is an evident significant payoff to selecting sites with the selected divergent taxa (figure 2). The advantage to selecting sites with these divergent taxa is marked for all data sets except FLA. The relationship between number of species and number of genera varies between data sets, apparently in proportion to the range of numbers of genera preserved by different site combinations (figure 2). There is a very strong relationship for NQFI (a range of 10 to 86 genera preserved) and the weakest relationship is seen for the NZL data (three to five genera preserved). Statistical analyses are problematic because each site enters into many site combinations, but regression analyses can be at least indicative. For each data set all three independent variables (number of sites, number of genera, number of species) were highly significant under multiple regression (Table 2) and all were retained in the model under stepwise regression (Table 3). For the stepwise regression, the order of entry of terms into the model was number of species > number of genera > number of sites for all data sets except NZL (with a very small number of genera), in which the order was number of species > number of sites > number of genera.
Table 2

ANOVA table for the four data sets, for the independent variables shown and the dependent variable Evolutionary History. The data sets are North Queensland Flightless Insects (NQFI), Florida Ants (FLA), New England Bog Ants (NEBA), and New Zealand Lepidosaurs (NZL). In each case the regression was significant with P < 0.0001. The regression in each case had 3 degrees of freedom and the total number of degrees of freedom is given after each dataset abbreviation.

Data/parameterCoefficientStandard ErrorStandard Coefficientt-valueP
NQFI (16382)
Intercept3.0970.0323.09795.657<0.0001
Number of Sites−0.0260.002−0.008−16.876<0.0001
Number of Genera0.1630.0010.209197.165<0.0001
Number of Species0.125<0.0010.802689.038<0.0001
FLA (4094)
Intercept2.6000.0292.60090.273<0.0001
Number of Sites0.0110.0010.0148.241<0.0001
Number of Genera0.3100.0020.319135.947<0.0001
Number of Species0.1900.0010.698251.929<0.0001
NEBA (17464)
Intercept2.4170.0212.427115.492<0.0001
Number of Sites0.0050.0010.0115.806<0.0001
Number of Genera0.3330.0030.272119.329<0.0001
Number of Species0.2520.0010.758296.172<0.0001
NZL (19729)
Intercept−7.5511.779−7.551−4.243<0.0001
Number of Sites0.1150.0070.18516.224<0.0001
Number of Genera2.9310.3570.0498.216<0.0001
Number of Species0.0660.0020.36632.096<0.0001
Table 3

Final ANOVA tables after all three independent variables (Number of Sites, Number of Genera and Number of Species) were entered into the stepwise regression analysis. In all cases the regressions were significant with P < 0.0001. The degrees of freedom were as given in Table 2. The adjusted R2 value for each regression is given in parentheses after each dataset abbreviation.

Data/parameterCoefficientStandard ErrorStd. CoefficientF-to-Remove
NQFI (0.999)
Intercept3.0970.0323.0979150.323
Number of Sites−0.0260.002−0.008284.800
Number of Genera0.1630.0010.20938874.218
Number of Species0.125<0.0010.802474773.447
FLA (0.994)
Intercept2.6000.0292.6008149.174
Number of Sites0.0110.0010.01467.909
Number of Genera0.3100.0020.31918481.488
Number of Species0.1900.0010.69863468.304
NEBA (0.956)
Intercept2.4270.0212.42713338.354
Number of Sites0.0050.0010.01133.710
Number of Genera0.3330.0030.27214239.333
Number of Species0.2520.0010.75887717.638
NZL (0.288)
Intercept−7.5511.779−7.55118.007
Number of Sites0.1150.0070.185263.220
Number of Genera2.9310.3570.04967.494
Number of Species0.0060.0020.3661030.168
Because giving all results for the confidence limits for EH and species richness for all sites of an would make for a voluminous table, we present the results of all combinations of dropping one site at a time for the NEBA data, in Table 4.
Table 4

Confidence intervals for species richness calculated using the Chao84 estimator and for EH using the jackknife. The 22 combinations obtained by dropping each site in turn from Goltelli’s NEBA data are shown. For the data, see the Appendix.

Site OmittednSEH
ARC3437.961<46.000<70.34913.419<15.000<16.581
BH3441.538<54.000<87.06312.865<15.000<17.135
CB3334.597<39.000<55.54813.250<14.750<16.250
CKB3346.566<57.000<75.45813.177<14.500<15.823
HAW3437.962<46.000<70.34913.419<15.000<16.581
HBC3336.962<45.000<69.34913.169<14.750<16.331
OB3437.962<46.000<70.34913.419<15.000<16.581
PK3437.961<46.000<70.34913.419<15.000<16.581
QP3437.962<46.000<70.34913.419<15.000<16.581
RP3340.538<53.000<86.06313.092<14.750<16.408
SKP3334.597<39.000<55.54813.276<14.500<15.724
SW3435.991<44.000<84.23813.342<15.000<16.658
TPB3437.962<46.000<70.34913.419<15.000<16.581
WIN3437.962<46.000<70.34913.419<15.000<16.581
SPR3437.962<46.000<70.34913.419<15.000<16.581
SNA3437.962<46.000<70.34913.419<15.000<16.581
PEA3437.962<46.000<70.34913.419<15.000<16.581
CHI3437.962<46.000<70.34913.419<15.000<16.581
MOL3437.962<46.000<70.34913.419<15.000<16.581
COL3336.962<45.000<69.34913.169<14.750<16.331
CAR3437.962<46.000<70.34913.419<15.000<16.581

Terms: n is the observed species richness, S the estimated value and its 95% confidence limits and EH is Evolutionary History and its 95% confidence limits.

Discussion

We have demonstrated a method of using phylogenetic information implicit in systematic nomenclature to assess the conservation worth of sets of reserves using large proportions of their species, in fact potentially all of them. The method is not divorced from direct phylogenetic knowledge because systematists generally seek to make systematic nomenclature reflect this knowledge, and as it advances will modify the nomenclature. The information already being collected from surveys can be readily entered into the programs TREEMAKER and MeSA, and the results for moderate numbers of reserved (as in the NQFI case) readily sorted using popular spreadsheet programs such as EXCEL, enabling the most bio-diverse sets to be easily identified. The number of possible combinations does rise steeply with increasing number of locations, so that obtaining and listing all of these becomes prohibitive in computer time and effort, whether for identifying just species richness or EH. Simulated annealing has been proposed for identifying sets of locations maximising species richness (McDonnell et al. 2002) and this approach can also be used for maximising EH (Agapow & Crozier 2005). The estimates of statistical sufficiency in Table 4 are not strictly correct for these data, as discussed above, but the results bring out an important point. For some sites 34 species were recorded and others 33, but the 22 combinations formed by dropping one site each time yielded results which did not differ significantly: all the various combinations are not significantly different with respect either to the number of species preserved or the EH. The management implication is that the criteria for choosing between those combinations which do not differ significantly can rest on other grounds than species richness or EH. The identification of species is commonly a laborious and difficult process, so that it is natural that short cuts have been sought that avoid this task. One such short cut is “higher taxon richness”, in which higher taxa (such as genera or even families) are counted rather than species. Because higher taxa are more easily identified than species, this method is naturally attractive (reviewed by Crozier (1997)). In a study of subterranean bacterial communities related through an rRNA phylogeny, Crozier et al. (1999) found that higher taxon richness correlated well with GD. The present results indicate that the number of genera is highly predictive of EH (as gauged using systematic nomenclature) for large data sets. For small to medium sized data sets the predictiveness of EH drops off markedly as the range of number of genera preserved by site combinations decreases. For large data sets, such as NQFI, genus number is highly predictive of species number, a result suggesting that for such studies there could be a saving of effort through identifying specimens to genus only. Phylogenies or surrogates based on systematic nomenclature have been used in or recommended for ecological studies on community structure (Warwick & Clarke 1994, 1998, Clarke & Warwick 2001, Webb et al. 2002, Cattin et al. 2004, Gotelli 2004), and estimated functional divergence has been used instead of phylogeny in examining community structure (Petchey & Gaston 2002, Petchey et al. 2004). There seems therefore to be a widespread move towards going beyond species richness in biodiversity assessment and similar endeavors, as also shown by the use of unit-length morphological phylogenies (Faith et al. 2004). The methods suggested here have limitations. Groups in which there is minimal systematic structure, perhaps because they have radiated recently and not yet evolved high degrees of divergence, will have a poor reflection of phylogeny in their nomenclature. There are grounds for optimism, in that a study of the effects of phylogenetic inaccuracy on comparative analysis (Symonds 2002) found that the process is fairly robust against such errors. More serious, given the ambition to cover a significant proportion of the species in habitats (Humphries et al. 1995), is the lack of consistency across broad taxonomic groups, such as insects and mammals. If a consistent standard could be applied for systematics across at least the metazoa, such as a correspondence between systematic rank and time since origin (Avise & Johns 1999), then a broad array of animal groups could be included in such analyses. However, as it is, use of the NQFI data set shows that most terrestrial species could be included in analyses. The argument in favor of a phylogenetic basis for setting conservation priorities was put persuasively by Wilson (1992) and implemented in various metrics by others (reviewed by Crozier (1997)). However the idea that the object of conservation is to preserve the widest diversity of features in the biota shows that a phylogenetic rationale has long been implicit. But even if the underlying rationale for biodiversity preservation is phylogenetic, need the methods for achieving it be? If large numbers of species are involved, does a phylogenetic approach to assessment still matter (Humphries et al. 1995, Crozier 1997)? Our results indicate that phylogeny (gauged through its surrogate of systematic nomenclature) will make the most difference when the number of species is small. However, given that it is much more difficult and labor-intensive to collect the data than to analyse them, it would seem negligent not to investigate the effects of phylogeny now that there are adequate tools for doing so.
1site_FU,
2site_TU,
3site_WU,
4site_CU,
5site_BM,
6site_LU,
7site_AU,
8site_BK,
9site_MT,
10site_KU,
11site_LE,
12site_SU,
13site_HU,
14site_EU
;
TargaremineA_LY0811000000000000
Pseudignambia_D08300000110000000
Myerslopella_ML0600000001000000
Tryonicus_BL0211010111110000
Notuchus_DE0211011111111000
PeloridiidA_PE0210000000000000
Hackeriella_PE0100000001000000
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Austrovelia_AV0100010000000000
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Feronista_C02200010000000000
Leiradira_C03100000100000000
Loxogenius_C03211011010000000
Notonomus_C04300000010000000
Nurus_C04400000000000001
Setalis_C04600000111000000
Lecanomerus_C05700000111000000
Harpaline_C06000000000000001
Anomotarus_C06311000000000000
Loxandrus_C06500000000001010
Lacordairia_C06700000111000000
Chariotheca_CM5300000001000000
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Adelium_AD1400000010000000
Seirotrana_AD1500110010011000
Adelium_AD1800000001100000
Adelodemus_AD1900000001000000
Bellendenum_AD2200000001100000
Monteithium_AD2400010000000000
Nolicima_AD2500010011010000
Licinoma_AD2600000000000100
Dicyrtodes_AD2900000000100000
Epomidus_AD3300000001000000
Diaspirus_AD3400000010000000
Coripera_AD4200110000000000
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Caxtonana_CM0801010011100000
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Hydissus_CM1700110100000000
Apterotheca_CM5100000000010000
Mychestes_MY0511111111010000
Lissapterus_LU0200000000000001
Amphistomus_D00500010000000000
Aulacopris_D00701000000000000
Aptenocanthon_D01200000000000001
Temnoplectron_D06500000000000110
Tryonicus_BL0101010101100000
Myerslopella_ML0100010100000000
Myerslopella_ML0201000000000000
Myerslopella_ML0310000000000000
Myerslopella_ML0400000011000000
Myerslopella_ML0500010000000000
Notuchus_DE0100000001000000
Aellocoris_A01900000101000000
Aellocoris_A02000010000000000
Aellocoris_A02100000010010101
Aellocoris_A02211010000000000
Aellocoris_A02310000000000000
Aellocoris_A02401000000000000
Aellocoris_A02511110000000000
Glyptoaptera_A02800011111000000
Glyptoaptera_A02901010011110000
Spinandra_A03111001111101000
Spinandra_A03200000001000000
Spinandra_A03300000001100000
Spinandra_A03400000010010000
GenusA_A03711111111100000
GenusB_A03800000011010000
GenusA_A03501110000000000
GenusA_A03600000011000000
GenusE_A03901011110010010
GenusE_A04000010000000000
Drakiessa_A06400000011000000
Drakiessa_A06500000101100000
Chelonoderus_A06711111101100000
Chelonoderus_A06800000010000000
Chelonoderus_A06900000011000000
Aegisocoris_A07100000011100000
Neophloeobia_A07300000000000110
Neophloeobia_A07411011101000000
Neophloeobia_A07500000000001000
Mesophloeobia_A07700000000010000
Granulaptera_A07900111111100000
Granulaptera_A08001001011110000
Granulaptera_A08100000011110000
Granulaptera_A08201010010000000
Granulaptera_A08300000111000000
Granulaptera_A08411000000000000
Grosshygia_GR0100000010000000
Grosshygia_GR0200000001100000
TargaremineA_LY0700010011100000
Pamborus_C00311111111011110
Pamborus_C00400110100000000
Mecyclothorax_C00800000101000000
Mecyclothorax_C00901010000000000
Coptocarpus_C01500000011000000
Castelnaudia_C01800000000010000
Castelnaudia_C01911111000000000
Castelnaudia_C02000000111010000
Leiradira_C02300000011000000
Leiradira_C02400000001000000
Leiradira_C02500000100000000
Leiradira_C02611011100000000
Leiradira_C02700000011100000
Leiradira_C02810000000000000
Leiradira_C02901010000000000
Leiradira_C03000010000000000
Notonomus_C03300010000000000
Notonomus_C03400010010011110
Notonomus_C03500000000000001
Notonomus_C03600010000000000
Notonomus_C03700000011000000
Notonomus_C03800000001000000
Notonomus_C03900000111000000
Notonomus_C04000000110000000
Notonomus_C04101110000000000
Notonomus_C04200100000000000
Trichosternus_C04700000010000000
Trichosternus_C04800000001000000
Trichosternus_C04900011110010000
Trichosternus_C05000000001000000
Trichosternus_C05100000010000000
Trichosternus_C05200000000000110
Trichosternus_C05300000011000000
Trichosternus_C05500000000000001
Trichosternus_C05600000100000000
Harpaline_C05810000000000000
Harpaline_C05901010000000000
Anomotarus_C06100010000010000
Carenum_C06800100111000000
Philipis_CP0700000001100000
Philipis_CP1010000000000000
Philipis_CP1501000000000000
Philipis_CP1601100000000000
Philipis_CP1901000000000000
Philipis_CP2000010000000000
Philipis_CP2100000001000000
Philipis_CP2300000001000000
Philipis_CP2400000001000000
Philipis_CP2500000001000000
Philipis_CP2600000000000001
Philipis_CP2700000100000000
Philipis_CP3200000011000000
Philipis_CP3300010000000000
Philipis_CP3400000101100000
Philipis_CP3600000000100000
Terradessus_DY0101000000000000
Athemistus_AT0100010000000000
Athemistus_AT0210000000000000
Adelium_AD0410011111011000
Adelium_AD0601110111000000
Adelium_AD0711011000000000
Adelium_AD0801011111111000
Adelium_AD0900000000001111
Adelium_AD1100000000000001
Adelium_AD1200000000000110
Adelium_AD1300000010000000
Coripera_AD1611000000000000
Adelium_AD1710010111010000
Bellendenum_AD2000000010000000
Bellendenum_AD2100000001000000
Monteithium_AD2311000000000000
Dicyrtodes_AD2800000001000000
Epomidus_AD3000000001000000
Diaspirus_AD3100000010000000
Leptogastrus_AD3500010000000000
Leptogastrus_AD3611000000000000
Coripera_AD4000000100000000
Coripera_AD4100010000000000
Apocryphodes_AD4300000000100000
Leptogastrus_AD4400110000000000
Adelium_AD4500000010000000
Bellendenum_AD4711000000000000
Caxtonana_CM0100000010000000
Caxtonana_CM0200010000000000
Caxtonana_CM0300000010000000
Caxtonana_CM0400000001000000
Caxtonana_CM0500000000100000
Caxtonana_CM0600000011000000
Caxtonana_CM0700110000000000
Apterotheca_CM0900000001000000
Apterotheca_CM1000010000000000
Cuemus_CM1210000000000000
Cuemus_CM1300000001100000
Caxtonana_CM1410000000000000
Caxtonana_CM1500000010000000
Omolipus_CM1811111101000000
Caxtonana_CM2100000000010000
Apterotheca_CM2300010111000000
Apterotheca_CM2400000011000000
Apterotheca_CM2501101100010000
Apterotheca_CM2600010000000000
Apterotheca_CM2700000011000000
Apterotheca_CM2800000000000110
Apterotheca_CM2900000000000001
Apterotheca_CM3001000000000000
Apterotheca_CM3200000010000000
Apterotheca_CM3300000100000000
Apterotheca_CM35a00000000100000
Apterotheca_CM35b00001000000000
Apterotheca_CM35c10000000000000
Apterotheca_CM3600000001000000
Apterotheca_CM3700001000000000
Apterotheca_CM3800000010010000
Apterotheca_CM3901010000000000
Apterotheca_CM4010000000000000
Caxtonana_CM4100000000100000
Apterotheca_CM4200010000000000
Omolipus_CM4300010000000000
Apterotheca_CM5000000110000000
Mychestes_MY0111010111100000
Mychestes_MY0300000001000000
Lissapterus_LU0101000001000000
Amphistomus_D00400000000000100
Aptenocanthon_D00800000111000000
Aptenocanthon_D00900000011010000
Aptenocanthon_D01010000000000000
Aptenocanthon_D01100000100000000
Temnoplectron_D01900011000000000
Lepanus_D08800000000000001
Temnoplectron_D09710000000000000
Temnoplectron_D13801000000000000
Pseudignambia_D13900010000000000
Pseudignambia_D14000000010000000
Pseudignambia_D14100000001000000
Pseudignambia_D14201000000000000
Pseudignambia_D14300000001000000
Pseudignambia_D14401010000000000
Pseudignambia_D14500000001000000
Pseudignambia_D14600000000010000
Pseudignambia_D14700110000000000
Pseudignambia_D14800000011000000
Pseudignambia_D14900001100000000
Pseudignambia_D15000000001000000
Pseudignambia_D15100000110000000
Pseudignambia_D15200000000100000
Pseudignambia_D15300000000100000
Pseudignambia_D15400000000100000
Pseudignambia_D15500000000100000
Pseudignambia_D15600000100000000
;
203TargaremineA_LY08,
388Pseudignambia_D083,
138Myerslopella_ML06,
132Tryonicus_BL02,
140Notuchus_DE02,
143PeloridiidA_PE02,
142Hackeriella_PE01,
141Schizopteromiris_MI01,
197Grosshygia_GR03,
187Mesophloeobia_A078,
144Austrovelia_AV01,
145Kumaressa_A001,
153Aellocoris_A026,
154Euricoris_A027,
157Glyptoaptera_A030,
174Drakiessa_A066,
171GenusE_A041,
175GenusH_A043,
179Chelonoderus_A070,
181Aegisocoris_A072,
194Drakiessa_A088,
198Grosshygioides_GR04,
199Tomocoris_LY01,
200Australotarma_LY03,
201Targarops_LY06,
284Philipis_CP37,
267Darodilia_C069,
204TargaremineC_LY10,
205Mystropomus_C001,
208Pamborus_C005,
209Migadopine_C006,
210Laccopterum_C007,
213Mecyclothorax_C010,
214Raphetis_C011,
215Sitaphe_C012,
217Coptocarpus_C016,
218Illaphanus_C017,
222Castelnaudia_C021,
223Feronista_C022,
232Leiradira_C031,
233Loxogenius_C032,
244Notonomus_C043,
245Nurus_C044,
246Setalis_C046,
257Lecanomerus_C057,
260Harpaline_C060,
262Anomotarus_C063,
263Loxandrus_C065,
264Lacordairia_C067,
372Chariotheca_CM53,
286Terradessus_DY02,
289Athemistus_AT03,
290Blepegenes_AD01,
291Cardiothorax_AD02,
292Bluops_AD03,
301Adelium_AD14,
302Seirotrana_AD15,
305Adelium_AD18,
306Adelodemus_AD19,
309Bellendenum_AD22,
311Monteithium_AD24,
312Nolicima_AD25,
313Licinoma_AD26,
315Dicyrtodes_AD29,
317Epomidus_AD33,
319Diaspirus_AD34,
324Coripera_AD42,
329Dicyrtodes_AD49,
337Caxtonana_CM08,
340Apterotheca_CM11,
345Apterotheca_CM16,
346Hydissus_CM17,
371Apterotheca_CM51,
375Mychestes_MY05,
377Lissapterus_LU02,
379Amphistomus_D005,
380Aulacopris_D007,
385Aptenocanthon_D012,
387Temnoplectron_D065,
131Tryonicus_BL01,
133Myerslopella_ML01,
134Myerslopella_ML02,
135Myerslopella_ML03,
136Myerslopella_ML04,
137Myerslopella_ML05,
139Notuchus_DE01,
146Aellocoris_A019,
147Aellocoris_A020,
148Aellocoris_A021,
149Aellocoris_A022,
150Aellocoris_A023,
151Aellocoris_A024,
152Aellocoris_A025,
155Glyptoaptera_A028,
156Glyptoaptera_A029,
158Spinandra_A031,
159Spinandra_A032,
160Spinandra_A033,
161Spinandra_A034,
167GenusA_A037,
168GenusB_A038,
165GenusA_A035,
166GenusA_A036,
169GenusE_A039,
170GenusE_A040,
172Drakiessa_A064,
173Drakiessa_A065,
176Chelonoderus_A067,
177Chelonoderus_A068,
178Chelonoderus_A069,
180Aegisocoris_A071,
182Neophloeobia_A073,
183Neophloeobia_A074,
184Neophloeobia_A075,
186Mesophloeobia_A077,
188Granulaptera_A079,
189Granulaptera_A080,
190Granulaptera_A081,
191Granulaptera_A082,
192Granulaptera_A083,
193Granulaptera_A084,
195Grosshygia_GR01,
196Grosshygia_GR02,
202TargaremineA_LY07,
206Pamborus_C003,
207Pamborus_C004,
211Mecyclothorax_C008,
212Mecyclothorax_C009,
216Coptocarpus_C015,
219Castelnaudia_C018,
220Castelnaudia_C019,
221Castelnaudia_C020,
224Leiradira_C023,
225Leiradira_C024,
226Leiradira_C025,
227Leiradira_C026,
228Leiradira_C027,
229Leiradira_C028,
230Leiradira_C029,
231Leiradira_C030,
234Notonomus_C033,
235Notonomus_C034,
236Notonomus_C035,
237Notonomus_C036,
238Notonomus_C037,
239Notonomus_C038,
240Notonomus_C039,
241Notonomus_C040,
242Notonomus_C041,
243Notonomus_C042,
247Trichosternus_C047,
248Trichosternus_C048,
249Trichosternus_C049,
250Trichosternus_C050,
251Trichosternus_C051,
252Trichosternus_C052,
253Trichosternus_C053,
254Trichosternus_C055,
255Trichosternus_C056,
258Harpaline_C058,
259Harpaline_C059,
261Anomotarus_C061,
265Carenum_C068,
268Philipis_CP07,
269Philipis_CP10,
270Philipis_CP15,
271Philipis_CP16,
272Philipis_CP19,
273Philipis_CP20,
274Philipis_CP21,
275Philipis_CP23,
276Philipis_CP24,
277Philipis_CP25,
278Philipis_CP26,
279Philipis_CP27,
280Philipis_CP32,
281Philipis_CP33,
282Philipis_CP34,
283Philipis_CP36,
285Terradessus_DY01,
287Athemistus_AT01,
288Athemistus_AT02,
293Adelium_AD04,
294Adelium_AD06,
295Adelium_AD07,
296Adelium_AD08,
297Adelium_AD09,
298Adelium_AD11,
299Adelium_AD12,
300Adelium_AD13,
303Coripera_AD16,
304Adelium_AD17,
307Bellendenum_AD20,
308Bellendenum_AD21,
310Monteithium_AD23,
314Dicyrtodes_AD28,
316Epomidus_AD30,
318Diaspirus_AD31,
320Leptogastrus_AD35,
321Leptogastrus_AD36,
322Coripera_AD40,
323Coripera_AD41,
325Apocryphodes_AD43,
326Leptogastrus_AD44,
327Adelium_AD45,
328Bellendenum_AD47,
330Caxtonana_CM01,
331Caxtonana_CM02,
332Caxtonana_CM03,
333Caxtonana_CM04,
334Caxtonana_CM05,
335Caxtonana_CM06,
336Caxtonana_CM07,
338Apterotheca_CM09,
339Apterotheca_CM10,
341Cuemus_CM12,
342Cuemus_CM13,
343Caxtonana_CM14,
344Caxtonana_CM15,
347Omolipus_CM18,
348Caxtonana_CM21,
349Apterotheca_CM23,
350Apterotheca_CM24,
351Apterotheca_CM25,
352Apterotheca_CM26,
353Apterotheca_CM27,
354Apterotheca_CM28,
355Apterotheca_CM29,
356Apterotheca_CM30,
357Apterotheca_CM32,
358Apterotheca_CM33,
359Apterotheca_CM35a,
360Apterotheca_CM35b,
361Apterotheca_CM35c,
362Apterotheca_CM36,
363Apterotheca_CM37,
364Apterotheca_CM38,
365Apterotheca_CM39,
366Apterotheca_CM40,
367Caxtonana_CM41,
368Apterotheca_CM42,
369Omolipus_CM43,
370Apterotheca_CM50,
373Mychestes_MY01,
374Mychestes_MY03,
376Lissapterus_LU01,
378Amphistomus_D004,
381Aptenocanthon_D008,
382Aptenocanthon_D009,
383Aptenocanthon_D010,
384Aptenocanthon_D011,
386Temnoplectron_D019,
389Lepanus_D088,
390Temnoplectron_D097,
391Temnoplectron_D138,
392Pseudignambia_D139,
393Pseudignambia_D140,
394Pseudignambia_D141,
395Pseudignambia_D142,
396Pseudignambia_D143,
397Pseudignambia_D144,
398Pseudignambia_D145,
399Pseudignambia_D146,
400Pseudignambia_D147,
401Pseudignambia_D148,
402Pseudignambia_D149,
403Pseudignambia_D150,
404Pseudignambia_D151,
405Pseudignambia_D152,
406Pseudignambia_D153,
407Pseudignambia_D154,
408Pseudignambia_D155,
409Pseudignambia_D156
;
1site_ARC,
2site_BH,
3site_CB,
4site_CKB,
5site_HAW,
6site_HBC,
7site_OB,
8site_PK,
9site_QP,
10site_RP,
11site_SKP,
12site_SW,
13site_TPB,
14site_WIN,
15site_SPR,
16site_SNA,
17site_PEA,
18site_CHI,
19site_MOL,
20site_COL,
21site_MOO,
22site_CAR
;
Amblypone_pallipes0000010000300000006000
Aphaenogaster_rudis48126315984155223516201100702300
Leptothorax_curvispinosus0000000003800000000000
Leptothorax_ambiguus0000000000000000000400
Leptothorax_longispinosus0182300161011000500001600
Myrmecina_americana0200010000000000000000
Myrmica_cfbrevispinosus0004000000000001000000
Myrmica_detrinodis010000001000000010005912
Myrmica_punctiventris20115440501171202816116100013900
Myrmica_sculptilis0212409012360740000000000
Myrmica_smithana00050300156010000000000
Stenamma_diecki03000011000011000010010
Stenamma_impar0104000000010030000200
Stenamma_schmitti0110011000010000000000
Camponotus_herculeanus01000000101000000330539
Camponotus_noveborencensis0000011140000401000000
Camponotus_nearcticus0001000002000000000000
Camponotus_pennsylvanicus35012161715012217560250000800
Formica_argentea00000780006600000000000
Formica_fusca00020015004000000000010
Formica_glacialis0000000000000000000003
Formica_neogagates00000000013500000000000
Formica_obscuriventris0010000000000000000000
Formica_subintegra000000000209000000000000
Formica_subsericea000002200018400000000000
Lasius_alienus0011000091500003350444
Lasius_flavus0000010000000000000000
Lasius_neoniger00000000001100000030000
Lasius_speculiventris0000010000010000000000
Lasius_umbratus1000000000011010004020
Prenolepis_imparis0000000000100000000000
Dolichoderus_plagiatus0001000000000000000000
Tapinoma_sessile0031000013020000000000
Stenamma_brevicorne0002001000100000000000
;
6Amblypone_pallipes,
12Aphaenogaster_rudis,
15Leptothorax_curvispinosus,
16Leptothorax_ambiguus,
17Leptothorax_longispinosus,
22Myrmecina_americana,
25Myrmica_cfbrevispinosus,
26Myrmica_detrinodis,
27Myrmica_punctiventris,
28Myrmica_sculptilis,
29Myrmica_smithana,
32Stenamma_diecki,
33Stenamma_impar,
34Stenamma_schmitti,
41Camponotus_herculeanus,
42Camponotus_noveborencensis,
43Camponotus_nearcticus,
44Camponotus_pennsylvanicus,
48Formica_argentea,
49Formica_fusca,
50Formica_glacialis,
51Formica_neogagates,
53Formica_obscuriventris,
54Formica_subintegra,
55Formica_subsericea,
58Lasius_alienus,
59Lasius_flavus,
60Lasius_neoniger,
61Lasius_speculiventris,
62Lasius_umbratus,
64Prenolepis_imparis,
69Dolichoderus_plagiatus,
71Tapinoma_sessile,
72Stenamma_brevicorne
;
1site_1,
2site_2,
3site_3,
4site_4,
5site_5,
6site_6,
7site_7,
8site_8,
9site_9,
10site_10,
11site_11,
12site_12,
13site_13,
14site_14,
15site_15
;
Sphenodon_guntheri000010001000001
Sphenodon_punctulatus100001000010000
Hoplodactylus_spPKI000000001000101
Cyclodina_spTwo000110000000100
Naultinus_tuberculatus000001000100010
Hoplodactylus_chrysosireticus100001000010000
Hoplodactylus_duvaucelii000000011100000
Hoplodactylus_granulatus110000000010000
Hoplodactylus_kahutarae000010000000011
Hoplodactylus_maculatus100000010000010
Hoplodactylus_nebulosus000100100010000
Hoplodactylus_pacificus100010000001000
Hoplodactylus_stephensi010000000100001
Hoplodactylus_spNK000000010110000
Hoplodactylus_spMa001010100000000
Hoplodactylus_spMtA100110000000000
Hoplodactylus_spCan000001001000100
Hoplodactylus_spSoA000001000010001
Hoplodactylus_spDap011000000010000
Hoplodactylus_spEaO100010000001000
Hoplodactylus_spWeO010100001000000
Hoplodactylus_spSoM000010000100010
Hoplodactylus_spWes000000100000101
Hoplodactylus_sp3KI000000100000011
Hoplodactylus_spMaI001011000000000
Hoplodactylus_rakiurae100000100000001
Naultinus_elegans101001000000000
Naultinus_gemmeus100000000000011
Naultinus_grayii100000010001000
Naultinus_manukanus010001000010000
Naultinus_rudis001000001000001
Naultinus_stellatus000000110000010
Cyclodina_aenea001010000000100
Cyclodina_alani000100000100100
Cyclodina_macgregori100000011000000
Cyclodina_oliveri100000000100100
Cyclodina_ornata000001000010001
Cyclodina_whitakeri010000000100010
Cyclodina_spOne001000010000010
Leiolopisma_acrinasum000010000110000
Leiolopisma_chloronoton100000010000001
Leiolopisma_fallai100000000101000
Leiolopisma_grande010011000000000
Leiolopisma_homalanotum000000001000101
Leiolopisma_inconspicuum000011000000001
Leiolopisma_infrapunctatum100000010001000
Leiolopisma_lineoocellatum110000001000000
Leiolopisma_maccanni000111000000000
Leiolopisma_microlepis000011010000000
Leiolopisma_moco010001000000010
Leiolopisma_nigriplantare100000001000010
Leiolopisma_polychroma000011000000001
Leiolopisma_notosaurus000000110000001
Leiolopisma_otagense010001000010000
Leiolopisma_waimatense001001000001000
Leiolopisma_smithi011000100000000
Leiolopisma_stenotis000011010000000
Leiolopisma_striatum000001011000000
Leiolopisma_suteri000100100000100
Leiolopisma_zelandicum110000010000000
Leiolopisma_spOne101000000001000
Leiolopisma_spTwo100010000100000
;
9Sphenodon_guntheri,
8Sphenodon_punctulatus,
40Hoplodactylus_spPKI,
55Cyclodina_spTwo,
47Naultinus_tuberculatus,
19Hoplodactylus_chrysosireticus,
20Hoplodactylus_duvaucelii,
21Hoplodactylus_granulatus,
22Hoplodactylus_kahutarae,
23Hoplodactylus_maculatus,
24Hoplodactylus_nebulosus,
25Hoplodactylus_pacificus,
26Hoplodactylus_stephensi,
27Hoplodactylus_spNK,
28Hoplodactylus_spMa,
29Hoplodactylus_spMtA,
30Hoplodactylus_spCan,
31Hoplodactylus_spSoA,
32Hoplodactylus_spDap,
33Hoplodactylus_spEaO,
34Hoplodactylus_spWeO,
35Hoplodactylus_spSoM,
36Hoplodactylus_spWes,
37Hoplodactylus_sp3KI,
38Hoplodactylus_spMaI,
39Hoplodactylus_rakiurae,
41Naultinus_elegans,
42Naultinus_gemmeus,
43Naultinus_grayii,
44Naultinus_manukanus,
45Naultinus_rudis,
46Naultinus_stellatus,
48Cyclodina_aenea,
49Cyclodina_alani,
50Cyclodina_macgregori,
51Cyclodina_oliveri,
52Cyclodina_ornata,
53Cyclodina_whitakeri,
54Cyclodina_spOne,
56Leiolopisma_acrinasum,
57Leiolopisma_chloronoton,
58Leiolopisma_fallai,
59Leiolopisma_grande,
60Leiolopisma_homalanotum,
61Leiolopisma_inconspicuum,
62Leiolopisma_infrapunctatum,
63Leiolopisma_lineoocellatum,
64Leiolopisma_maccanni,
65Leiolopisma_microlepis,
66Leiolopisma_moco,
67Leiolopisma_nigriplantare,
68Leiolopisma_polychroma,
69Leiolopisma_notosaurus,
70Leiolopisma_otagense,
71Leiolopisma_waimatense,
72Leiolopisma_smithi,
73Leiolopisma_stenotis,
74Leiolopisma_striatum,
75Leiolopisma_suteri,
76Leiolopisma_zelandicum,
77Leiolopisma_spOne,
78Leiolopisma_spTwo
;
  13 in total

1.  Proposal for a standardized temporal scheme of biological classification for extant species.

Authors:  J C Avise; G C Johns
Journal:  Proc Natl Acad Sci U S A       Date:  1999-06-22       Impact factor: 11.205

2.  Preserving the tree of life.

Authors:  Georgina M Mace; John L Gittleman; Andy Purvis
Journal:  Science       Date:  2003-06-13       Impact factor: 47.728

3.  Extinction and the loss of functional diversity.

Authors:  Owen L Petchey; Kevin J Gaston
Journal:  Proc Biol Sci       Date:  2002-08-22       Impact factor: 5.349

4.  The effects of topological inaccuracy in evolutionary trees on the phylogenetic comparative method of independent contrasts.

Authors:  Matthew R E Symonds
Journal:  Syst Biol       Date:  2002-08       Impact factor: 15.683

Review 5.  The principle of complementarity in the design of reserve networks to conserve biodiversity: a preliminary history.

Authors:  James Justus; Sahotra Sarkar
Journal:  J Biosci       Date:  2002-07       Impact factor: 1.826

Review 6.  The impact of species concept on biodiversity studies.

Authors:  Paul-Michael Agapow; Olaf R Bininda-Emonds; Keith A Crandall; John L Gittleman; Georgina M Mace; Jonathon C Marshall; Andy Purvis
Journal:  Q Rev Biol       Date:  2004-06       Impact factor: 4.875

7.  Phylogenetic constraints and adaptation explain food-web structure.

Authors:  Marie-France Cattin; Louis-Félix Bersier; Carolin Banasek-Richter; Richard Baltensperger; Jean-Pierre Gabriel
Journal:  Nature       Date:  2004-02-26       Impact factor: 49.962

8.  Extinction and the loss of evolutionary history.

Authors:  S Nee; R M May
Journal:  Science       Date:  1997-10-24       Impact factor: 47.728

9.  Tempo and mode of sequence evolution in mitochondrial DNA of Hawaiian Drosophila.

Authors:  R DeSalle; T Freedman; E M Prager; A C Wilson
Journal:  J Mol Evol       Date:  1987       Impact factor: 2.395

10.  Ant community change across a ground vegetation gradient in north Florida's longleaf pine flatwoods.

Authors:  David Lubertazzi; Walter Tschinkel
Journal:  J Insect Sci       Date:  2003-07-24       Impact factor: 1.857

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  13 in total

1.  Computing diversity from dated phylogenies and taxonomic hierarchies: does it make a difference to the conclusions?

Authors:  Carlo Ricotta; Giovanni Bacaro; Michela Marignani; Sandrine Godefroid; Stefano Mazzoleni
Journal:  Oecologia       Date:  2012-04-17       Impact factor: 3.225

Review 2.  Old and new challenges in using species diversity for assessing biodiversity.

Authors:  Alessandro Chiarucci; Giovanni Bacaro; Samuel M Scheiner
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2011-08-27       Impact factor: 6.237

3.  Measures of phylogenetic differentiation provide robust and complementary insights into microbial communities.

Authors:  Donovan H Parks; Robert G Beiko
Journal:  ISME J       Date:  2012-08-02       Impact factor: 10.302

4.  Biodiversity, Shapley value and phylogenetic trees: some remarks.

Authors:  Hubert Stahn
Journal:  J Math Biol       Date:  2019-10-22       Impact factor: 2.259

5.  Big brains reduce extinction risk in Carnivora.

Authors:  Eric S Abelson
Journal:  Oecologia       Date:  2019-10-24       Impact factor: 3.225

6.  Ground dwelling ants as surrogates for establishing conservation priorities in the Australian wet tropics.

Authors:  Sze Huei Yek; Stephen E Willliams; Chris J Burwell; Simon K A Robson; Ross H Crozier
Journal:  J Insect Sci       Date:  2009       Impact factor: 1.857

7.  Associations of the fecal microbiome with urinary estrogens and estrogen metabolites in postmenopausal women.

Authors:  Barbara J Fuhrman; Heather Spencer Feigelson; Roberto Flores; Mitchell H Gail; Xia Xu; Jacques Ravel; James J Goedert
Journal:  J Clin Endocrinol Metab       Date:  2014-12       Impact factor: 5.958

8.  Spatial patterns of phylogenetic diversity.

Authors:  Hélène Morlon; Dylan W Schwilk; Jessica A Bryant; Pablo A Marquet; Anthony G Rebelo; Catherine Tauss; Brendan J M Bohannan; Jessica L Green
Journal:  Ecol Lett       Date:  2010-12-20       Impact factor: 9.492

9.  The role of the phylogenetic diversity measure, PD, in bio-informatics: getting the definition right.

Authors:  Daniel P Faith
Journal:  Evol Bioinform Online       Date:  2007-02-19       Impact factor: 1.625

10.  Phylogenetic diversity (PD) and biodiversity conservation: some bioinformatics challenges.

Authors:  Daniel P Faith; Andrew M Baker
Journal:  Evol Bioinform Online       Date:  2007-02-17       Impact factor: 1.625

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