Literature DB >> 19323639

Estimating instantaneous irregularity of neuronal firing.

Takeaki Shimokawa1, Shigeru Shinomoto.   

Abstract

Cortical neurons in vivo had been regarded as Poisson spike generators that convey no information other than the rate of random firing. Recently, using a metric for analyzing local variation of interspike intervals, researchers have found that individual neurons express specific patterns in generating spikes, which may symbolically be termed regular, random, or bursty, rather invariantly in time. In order to study the dynamics of firing patterns in greater detail, we propose here a Bayesian method for estimating firing irregularity and the firing rate simultaneously for a given spike sequence, and we implement an algorithm that may render the empirical Bayesian estimation practicable for data comprising a large number of spikes. Application of this method to electrophysiological data revealed a subtle correlation between the degree of firing irregularity and the firing rate for individual neurons. Irregularity of firing did not deviate greatly around the low degree of dependence on the firing rate and remained practically unchanged for individual neurons in the cortical areas V1 and MT, whereas it fluctuated greatly in the lateral geniculate nucleus of the thalamus. This indicates the presence and absence of autocontrolling mechanisms for maintaining patterns of firing in the cortex and thalamus, respectively.

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Year:  2009        PMID: 19323639     DOI: 10.1162/neco.2009.08-08-841

Source DB:  PubMed          Journal:  Neural Comput        ISSN: 0899-7667            Impact factor:   2.026


  15 in total

1.  Behavior-related pauses in simple-spike activity of mouse Purkinje cells are linked to spike rate modulation.

Authors:  Ying Cao; Selva K Maran; Mukesh Dhamala; Dieter Jaeger; Detlef H Heck
Journal:  J Neurosci       Date:  2012-06-20       Impact factor: 6.167

2.  Kernel bandwidth optimization in spike rate estimation.

Authors:  Hideaki Shimazaki; Shigeru Shinomoto
Journal:  J Comput Neurosci       Date:  2009-08-05       Impact factor: 1.621

3.  A characterization of the time-rescaled gamma process as a model for spike trains.

Authors:  Takeaki Shimokawa; Shinsuke Koyama; Shigeru Shinomoto
Journal:  J Comput Neurosci       Date:  2009-10-21       Impact factor: 1.621

4.  The effects of nicotine exposure and PFC transection on the time-frequency distribution of VTA DA neurons' firing activities.

Authors:  Ting Y Chen; Die Zhang; Andrei Dragomir; Yasemin Akay; Metin Akay
Journal:  Med Biol Eng Comput       Date:  2011-03-30       Impact factor: 2.602

5.  Relating neuronal firing patterns to functional differentiation of cerebral cortex.

Authors:  Shigeru Shinomoto; Hideaki Kim; Takeaki Shimokawa; Nanae Matsuno; Shintaro Funahashi; Keisetsu Shima; Ichiro Fujita; Hiroshi Tamura; Taijiro Doi; Kenji Kawano; Naoko Inaba; Kikuro Fukushima; Sergei Kurkin; Kiyoshi Kurata; Masato Taira; Ken-Ichiro Tsutsui; Hidehiko Komatsu; Tadashi Ogawa; Kowa Koida; Jun Tanji; Keisuke Toyama
Journal:  PLoS Comput Biol       Date:  2009-07-10       Impact factor: 4.475

6.  Mapping of visual receptive fields by tomographic reconstruction.

Authors:  Gordon Pipa; Zhe Chen; Sergio Neuenschwander; Bruss Lima; Emery N Brown
Journal:  Neural Comput       Date:  2012-06-26       Impact factor: 2.026

7.  Similarity in Neuronal Firing Regimes across Mammalian Species.

Authors:  Yasuhiro Mochizuki; Tomokatsu Onaga; Hideaki Shimazaki; Takeaki Shimokawa; Yasuhiro Tsubo; Rie Kimura; Akiko Saiki; Yutaka Sakai; Yoshikazu Isomura; Shigeyoshi Fujisawa; Ken-Ichi Shibata; Daichi Hirai; Takahiro Furuta; Takeshi Kaneko; Susumu Takahashi; Tomoaki Nakazono; Seiya Ishino; Yoshio Sakurai; Takashi Kitsukawa; Jong Won Lee; Hyunjung Lee; Min Whan Jung; Cecilia Babul; Pedro E Maldonado; Kazutaka Takahashi; Fritzie I Arce-McShane; Callum F Ross; Barry J Sessle; Nicholas G Hatsopoulos; Thomas Brochier; Alexa Riehle; Paul Chorley; Sonja Grün; Hisao Nishijo; Satoe Ichihara-Takeda; Shintaro Funahashi; Keisetsu Shima; Hajime Mushiake; Yukako Yamane; Hiroshi Tamura; Ichiro Fujita; Naoko Inaba; Kenji Kawano; Sergei Kurkin; Kikuro Fukushima; Kiyoshi Kurata; Masato Taira; Ken-Ichiro Tsutsui; Tadashi Ogawa; Hidehiko Komatsu; Kowa Koida; Keisuke Toyama; Barry J Richmond; Shigeru Shinomoto
Journal:  J Neurosci       Date:  2016-05-25       Impact factor: 6.167

8.  Lognormal firing rate distribution reveals prominent fluctuation-driven regime in spinal motor networks.

Authors:  Peter C Petersen; Rune W Berg
Journal:  Elife       Date:  2016-10-26       Impact factor: 8.140

9.  Applying the multivariate time-rescaling theorem to neural population models.

Authors:  Felipe Gerhard; Robert Haslinger; Gordon Pipa
Journal:  Neural Comput       Date:  2011-03-11       Impact factor: 2.026

10.  Power-law inter-spike interval distributions infer a conditional maximization of entropy in cortical neurons.

Authors:  Yasuhiro Tsubo; Yoshikazu Isomura; Tomoki Fukai
Journal:  PLoS Comput Biol       Date:  2012-04-12       Impact factor: 4.475

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