Literature DB >> 19322246

Microbial diversity in alpine tundra soils correlates with snow cover dynamics.

Lucie Zinger1, Bahar Shahnavaz, Florence Baptist, Roberto A Geremia, Philippe Choler.   

Abstract

The temporal and spatial snow cover dynamics is the primary factor controlling the plant communities' composition and biogeochemical cycles in arctic and alpine tundra. However, the relationships between the distribution of snow and the diversity of soil microbial communities remain largely unexplored. Over a period of 2 years, we monitored soil microbial communities at three sites, including contiguous alpine meadows of late and early snowmelt locations (LSM and ESM, respectively). Bacterial and fungal communities were characterized by using molecular fingerprinting and cloning/sequencing of microbial ribosomal DNA extracted from the soil. Herein, we show that the spatial and temporal distribution of snow strongly correlates with microbial community composition. High seasonal contrast in ESM is associated with marked seasonal shifts for bacterial communities; whereas less contrasted seasons because of long-lasting snowpack in LSM is associated with increased fungal diversity. Finally, our results indicate that, similar to plant communities, microbial communities exhibit important shifts in composition at two extremes of the snow cover gradient. However, winter conditions lead to the convergence of microbial communities independently of snow cover presence. This study provides new insights into the distribution of microbial communities in alpine tundra in relation to snow cover dynamics, and may be helpful in predicting the future of microbial communities and biogeochemical cycles in arctic and alpine tundra in the context of a warmer climate.

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Year:  2009        PMID: 19322246     DOI: 10.1038/ismej.2009.20

Source DB:  PubMed          Journal:  ISME J        ISSN: 1751-7362            Impact factor:   10.302


  20 in total

1.  Ecological succession reveals potential signatures of marine-terrestrial transition in salt marsh fungal communities.

Authors:  Francisco Dini-Andreote; Victor Satler Pylro; Petr Baldrian; Jan Dirk van Elsas; Joana Falcão Salles
Journal:  ISME J       Date:  2016-01-29       Impact factor: 10.302

2.  Fungal diversity in permafrost and tallgrass prairie soils under experimental warming conditions.

Authors:  C Ryan Penton; Derek St Louis; James R Cole; Yiqi Luo; Liyou Wu; E A G Schuur; Jizhong Zhou; James M Tiedje
Journal:  Appl Environ Microbiol       Date:  2013-09-06       Impact factor: 4.792

3.  Organic layer serves as a hotspot of microbial activity and abundance in Arctic tundra soils.

Authors:  Seung-Hoon Lee; Inyoung Jang; Namyi Chae; Taejin Choi; Hojeong Kang
Journal:  Microb Ecol       Date:  2012-09-15       Impact factor: 4.552

4.  Shrub range expansion alters diversity and distribution of soil fungal communities across an alpine elevation gradient.

Authors:  Courtney G Collins; Jason E Stajich; Sören E Weber; Nuttapon Pombubpa; Jeffrey M Diez
Journal:  Mol Ecol       Date:  2018-05-10       Impact factor: 6.185

5.  Huanglongbing alters the structure and functional diversity of microbial communities associated with citrus rhizosphere.

Authors:  Pankaj Trivedi; Zhili He; Joy D Van Nostrand; Gene Albrigo; Jizhong Zhou; Nian Wang
Journal:  ISME J       Date:  2011-07-28       Impact factor: 10.302

6.  Distinct Anaerobic Bacterial Consumers of Cellobiose-Derived Carbon in Boreal Fens with Different CO2/CH4 Production Ratios.

Authors:  Heli Juottonen; Alexander Eiler; Christina Biasi; Eeva-Stiina Tuittila; Kim Yrjälä; Hannu Fritze
Journal:  Appl Environ Microbiol       Date:  2017-02-01       Impact factor: 4.792

7.  Calcite biomineralization by bacterial isolates from the recently discovered pristine karstic herrenberg cave.

Authors:  Anna Rusznyák; Denise M Akob; Sándor Nietzsche; Karin Eusterhues; Kai Uwe Totsche; Thomas R Neu; Torsten Frosch; Jürgen Popp; Robert Keiner; Jörn Geletneky; Lutz Katzschmann; Ernst-Detlef Schulze; Kirsten Küsel
Journal:  Appl Environ Microbiol       Date:  2011-12-16       Impact factor: 4.792

8.  Assessment of microbial communities by graph partitioning in a study of soil fungi in two Alpine meadows.

Authors:  L Zinger; E Coissac; P Choler; R A Geremia
Journal:  Appl Environ Microbiol       Date:  2009-07-17       Impact factor: 4.792

9.  Groundtruthing next-gen sequencing for microbial ecology-biases and errors in community structure estimates from PCR amplicon pyrosequencing.

Authors:  Charles K Lee; Craig W Herbold; Shawn W Polson; K Eric Wommack; Shannon J Williamson; Ian R McDonald; S Craig Cary
Journal:  PLoS One       Date:  2012-09-06       Impact factor: 3.240

10.  Effects of season and experimental warming on the bacterial community in a temperate mountain forest soil assessed by 16S rRNA gene pyrosequencing.

Authors:  Melanie Kuffner; Brigitte Hai; Thomas Rattei; Christelle Melodelima; Michael Schloter; Sophie Zechmeister-Boltenstern; Robert Jandl; Andreas Schindlbacher; Angela Sessitsch
Journal:  FEMS Microbiol Ecol       Date:  2012-06-25       Impact factor: 4.194

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