Literature DB >> 1931996

Multibilayer structure of dimyristoylphosphatidylcholine dihydrate as determined by energy minimization.

G Vanderkooi1.   

Abstract

Complete energy minimization was carried out on the multibilayer crystal structure of 1,2-dimyristoyl-sn-glycero-3-phosphocholine dihydrate (DMPC.2H2O), starting from the X-ray structure determination reported by Pearson and Pascher (1979) Nature 281, 499-501. The asymmetric unit contains two nonidentical DMPC molecules and four water molecules. Minimization removed the acyl chain disorder present in the X-ray structure and caused the carbon planes of the acyl chains to become mutually parallel. Two energy-minimized structures (structures I and II) were found which mainly differed in the hydrogen-bonding arrangement of the waters of hydration. In structure I as in the X-ray structure, one of the water molecules forms a hydrogen-bonded bridge between successive bilayers; but in structure II, all hydrogen bonds are satisfied on the same bilayer. Structure II corresponds to the global energy minimum and is also a suitable structure for single bilayers. The lattice constants and cell volume of the minimized structures are close to the experimental values. The electrostatic force between DMPC bilayers is attractive. The mean hydration energy of the water is -14.2 kcal/mol, which is 2.5 kcal/mol lower than the binding energy of ice.

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Year:  1991        PMID: 1931996     DOI: 10.1021/bi00108a022

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  14 in total

1.  Molecular dynamics simulation of the structure of dimyristoylphosphatidylcholine bilayers with cholesterol, ergosterol, and lanosterol.

Authors:  A M Smondyrev; M L Berkowitz
Journal:  Biophys J       Date:  2001-04       Impact factor: 4.033

Review 2.  Modeling kinetics of subcellular disposition of chemicals.

Authors:  Stefan Balaz
Journal:  Chem Rev       Date:  2009-05       Impact factor: 60.622

3.  Molecular dynamics simulation of dipalmitoylphosphatidylcholine membrane with cholesterol sulfate.

Authors:  A M Smondyrev; M L Berkowitz
Journal:  Biophys J       Date:  2000-04       Impact factor: 4.033

4.  Structure and dynamics of primary hydration shell of phosphatidylcholine bilayers at subzero temperatures.

Authors:  C H Hsieh; W G Wu
Journal:  Biophys J       Date:  1996-12       Impact factor: 4.033

5.  Effects of phospholipid unsaturation on the membrane/water interface: a molecular simulation study.

Authors:  K Murzyn; T Róg; G Jezierski; Y Takaoka; M Pasenkiewicz-Gierula
Journal:  Biophys J       Date:  2001-07       Impact factor: 4.033

6.  Energy-minimized structures and packing states of a homologous series of mixed-chain phosphatidylcholines: a molecular mechanics study on the diglyceride moieties.

Authors:  S Li; Z Q Wang; H N Lin; C Huang
Journal:  Biophys J       Date:  1993-10       Impact factor: 4.033

7.  Molecular origin of the internal dipole potential in lipid bilayers: calculation of the electrostatic potential.

Authors:  C Zheng; G Vanderkooi
Journal:  Biophys J       Date:  1992-10       Impact factor: 4.033

8.  Molecular dynamics simulation of lipid reorientation at bilayer edges.

Authors:  Peter M Kasson; Vijay S Pande
Journal:  Biophys J       Date:  2004-06       Impact factor: 4.033

9.  Identification and characterization of kink motifs in 1-palmitoyl-2-oleoyl- phosphatidylcholines: a molecular mechanics study.

Authors:  S Li; H N Lin; Z Q Wang; C Huang
Journal:  Biophys J       Date:  1994-06       Impact factor: 4.033

10.  Computation of mixed phosphatidylcholine-cholesterol bilayer structures by energy minimization.

Authors:  G Vanderkooi
Journal:  Biophys J       Date:  1994-05       Impact factor: 4.033

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