Literature DB >> 19318206

Designing new cellular signaling pathways.

Peter M Pryciak1.   

Abstract

All cells respond to signals from the environment. Extracellular stimuli activate intracellular signal transduction pathways that make decisions about cell identity, behavior, and survival. A nascent field aims to design and construct new signaling pathways beyond those found in nature. Current strategies exploit the structural modularity of many signaling proteins, which makes them inherently amenable to domain-swapping tactics that exchange their input and output connections. The results reveal a remarkable degree of functional plasticity in signaling proteins and pathways, as well as regulatory logic that can be transported to new proteins. Modified adaptor and scaffold proteins can reroute signal traffic and adjust the response behavior of the pathway circuit. These synthetic biology approaches promise to deepen our understanding of existing signaling pathways and spur the development of new cellular tools for research, industry, and medicine.

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Year:  2009        PMID: 19318206      PMCID: PMC2661875          DOI: 10.1016/j.chembiol.2009.01.011

Source DB:  PubMed          Journal:  Chem Biol        ISSN: 1074-5521


  45 in total

1.  Active site-directed protein regulation.

Authors:  B Kobe; B E Kemp
Journal:  Nature       Date:  1999-11-25       Impact factor: 49.962

2.  Role of scaffolds in MAP kinase pathway specificity revealed by custom design of pathway-dedicated signaling proteins.

Authors:  K Harris; R E Lamson; B Nelson; T R Hughes; M J Marton; C J Roberts; C Boone; P M Pryciak
Journal:  Curr Biol       Date:  2001-11-27       Impact factor: 10.834

Review 3.  Assembly of cell regulatory systems through protein interaction domains.

Authors:  Tony Pawson; Piers Nash
Journal:  Science       Date:  2003-04-18       Impact factor: 47.728

4.  Rewiring MAP kinase pathways using alternative scaffold assembly mechanisms.

Authors:  Sang-Hyun Park; Ali Zarrinpar; Wendell A Lim
Journal:  Science       Date:  2003-01-02       Impact factor: 47.728

5.  A docking site determining specificity of Pbs2 MAPKK for Ssk2/Ssk22 MAPKKKs in the yeast HOG pathway.

Authors:  Kazuo Tatebayashi; Mutsuhiro Takekawa; Haruo Saito
Journal:  EMBO J       Date:  2003-07-15       Impact factor: 11.598

6.  Tuning bulk electrostatics to regulate protein function.

Authors:  Zach Serber; James E Ferrell
Journal:  Cell       Date:  2007-02-09       Impact factor: 41.582

7.  Integration of multiple signals through cooperative regulation of the N-WASP-Arp2/3 complex.

Authors:  K E Prehoda; J A Scott; R D Mullins; W A Lim
Journal:  Science       Date:  2000-10-27       Impact factor: 47.728

Review 8.  Engineered gene circuits.

Authors:  Jeff Hasty; David McMillen; J J Collins
Journal:  Nature       Date:  2002-11-14       Impact factor: 49.962

9.  A heterodimerizing leucine zipper coiled coil system for examining the specificity of a position interactions: amino acids I, V, L, N, A, and K.

Authors:  Asha Acharya; Sergei B Ruvinov; Jozsef Gal; Jonathan R Moll; Charles Vinson
Journal:  Biochemistry       Date:  2002-12-03       Impact factor: 3.162

Review 10.  Signalling specificity of Ser/Thr protein kinases through docking-site-mediated interactions.

Authors:  Ricardo M Biondi; Angel R Nebreda
Journal:  Biochem J       Date:  2003-05-15       Impact factor: 3.857

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  13 in total

Review 1.  Mapping the life histories of T cells.

Authors:  Ton N M Schumacher; Carmen Gerlach; Jeroen W J van Heijst
Journal:  Nat Rev Immunol       Date:  2010-08-06       Impact factor: 53.106

Review 2.  Towards genome-scale signalling network reconstructions.

Authors:  Daniel R Hyduke; Bernhard Ø Palsson
Journal:  Nat Rev Genet       Date:  2010-04       Impact factor: 53.242

3.  Cyclin-specific docking motifs promote phosphorylation of yeast signaling proteins by G1/S Cdk complexes.

Authors:  Samyabrata Bhaduri; Peter M Pryciak
Journal:  Curr Biol       Date:  2011-09-22       Impact factor: 10.834

Review 4.  Signal transduction: From the atomic age to the post-genomic era.

Authors:  Jeremy Thorner; Tony Hunter; Lewis C Cantley; Richard Sever
Journal:  Cold Spring Harb Perspect Biol       Date:  2014-10-30       Impact factor: 10.005

Review 5.  Strategies for protein synthetic biology.

Authors:  Raik Grünberg; Luis Serrano
Journal:  Nucleic Acids Res       Date:  2010-04-12       Impact factor: 16.971

6.  Building blocks for protein interaction devices.

Authors:  Raik Grünberg; Tony S Ferrar; Almer M van der Sloot; Marco Constante; Luis Serrano
Journal:  Nucleic Acids Res       Date:  2010-03-09       Impact factor: 16.971

Review 7.  Synthetic biology: tools to design, build, and optimize cellular processes.

Authors:  Eric Young; Hal Alper
Journal:  J Biomed Biotechnol       Date:  2010-01-27

Review 8.  Scaffolds: interaction platforms for cellular signalling circuits.

Authors:  András Zeke; Melinda Lukács; Wendell A Lim; Attila Reményi
Journal:  Trends Cell Biol       Date:  2009-08-03       Impact factor: 20.808

Review 9.  Protein design for pathway engineering.

Authors:  Dawn T Eriksen; Jiazhang Lian; Huimin Zhao
Journal:  J Struct Biol       Date:  2013-04-01       Impact factor: 2.867

10.  A man-made ATP-binding protein evolved independent of nature causes abnormal growth in bacterial cells.

Authors:  Joshua M Stomel; James W Wilson; Megan A León; Phillip Stafford; John C Chaput
Journal:  PLoS One       Date:  2009-10-08       Impact factor: 3.240

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