Literature DB >> 19307111

Decrypting the genome's alternative messages.

Britta Hartmann1, Juan Valcárcel.   

Abstract

Alternative splicing of messenger RNA (mRNA) precursors affects the majority of human genes, has a considerable impact on eukaryotic gene function and offers distinct opportunities for regulation. Alterations in alternative splicing can cause or modify the progression of a significant number of pathologies. Recent high-throughput technologies have uncovered a wealth of transcript diversity generated by alternative splicing, as well as examples for how this diversity can be established and become misregulated. A variety of mechanisms modulate splice site choice coordinately with other cellular processes, from transcription and mRNA editing or decay to miRNA-based regulation and telomerase function. Alternative splicing studies can contribute to our understanding of multiple biological processes, including genetic diversity, speciation, cell/stem cell differentiation, nervous system function, neuromuscular disorders and tumour progression.

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Year:  2009        PMID: 19307111     DOI: 10.1016/j.ceb.2009.02.006

Source DB:  PubMed          Journal:  Curr Opin Cell Biol        ISSN: 0955-0674            Impact factor:   8.382


  29 in total

1.  Characterization of NOL7 gene point mutations, promoter methylation, and protein expression in cervical cancer.

Authors:  Colleen L Doçi; Tanmayi P Mankame; Alexander Langerman; Kelly R Ostler; Rajani Kanteti; Timothy Best; Kenan Onel; Lucy A Godley; Ravi Salgia; Mark W Lingen
Journal:  Int J Gynecol Pathol       Date:  2012-01       Impact factor: 2.762

2.  An ESRP-regulated splicing programme is abrogated during the epithelial-mesenchymal transition.

Authors:  Claude C Warzecha; Peng Jiang; Karine Amirikian; Kimberly A Dittmar; Hezhe Lu; Shihao Shen; Wei Guo; Yi Xing; Russ P Carstens
Journal:  EMBO J       Date:  2010-08-13       Impact factor: 11.598

3.  Deciphering the splicing code.

Authors:  Yoseph Barash; John A Calarco; Weijun Gao; Qun Pan; Xinchen Wang; Ofer Shai; Benjamin J Blencowe; Brendan J Frey
Journal:  Nature       Date:  2010-05-06       Impact factor: 49.962

Review 4.  Alternative splicing and evolution: diversification, exon definition and function.

Authors:  Hadas Keren; Galit Lev-Maor; Gil Ast
Journal:  Nat Rev Genet       Date:  2010-04-08       Impact factor: 53.242

5.  Alternative splicing of the cyclin D1 proto-oncogene is regulated by the RNA-binding protein Sam68.

Authors:  Maria Paola Paronetto; Manuela Cappellari; Roberta Busà; Simona Pedrotti; Roberta Vitali; Clay Comstock; Terry Hyslop; Karen E Knudsen; Claudio Sette
Journal:  Cancer Res       Date:  2009-12-22       Impact factor: 12.701

6.  IRAS: High-Throughput Identification of Novel Alternative Splicing Regulators.

Authors:  S Zheng
Journal:  Methods Enzymol       Date:  2016-03-28       Impact factor: 1.600

7.  Model-based detection of alternative splicing signals.

Authors:  Yoseph Barash; Benjamin J Blencowe; Brendan J Frey
Journal:  Bioinformatics       Date:  2010-06-15       Impact factor: 6.937

Review 8.  RNA dust: where are the genes?

Authors:  Piero Carninci
Journal:  DNA Res       Date:  2010-03-07       Impact factor: 4.458

Review 9.  RNA-Seq reveals novel transcriptional reorganization in human alcoholic brain.

Authors:  Sean P Farris; R Dayne Mayfield
Journal:  Int Rev Neurobiol       Date:  2014       Impact factor: 3.230

10.  Affy exon tissues: exon levels in normal tissues in human, mouse and rat.

Authors:  Andrew A Pohl; Charles W Sugnet; Tyson A Clark; Kayla Smith; Pauline A Fujita; Melissa S Cline
Journal:  Bioinformatics       Date:  2009-07-01       Impact factor: 6.937

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