Literature DB >> 19304926

Polyadenylation releases mRNA from RNA polymerase II in a process that is licensed by splicing.

Frank Rigo1, Harold G Martinson.   

Abstract

When transcription is coupled to pre-mRNA processing in HeLa nuclear extracts nascent transcripts become attached to RNA polymerase II during assembly of the cleavage/polyadenylation apparatus (CPA), and are not released even after cleavage at the poly(A) site. Here we show that these cleaved transcripts are anchored to the polymerase at their 3' ends by the CPA or, when introns are present, by the larger 3'-terminal exon definition complex (EDC), which consists of splicing factors complexed with the CPA. Poly(A) addition releases the RNA from the polymerase when the RNA is anchored only by the CPA. When anchored by the EDC, poly(A) addition remains a requirement, but it triggers release only after being licensed by splicing. The process by which RNA must first be attached to the polymerase by the EDC, and then can only be released following dual inputs from splicing and polyadenylation, provides an obvious opportunity for surveillance as the RNA enters the transport pathway.

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Year:  2009        PMID: 19304926      PMCID: PMC2673064          DOI: 10.1261/rna.1409209

Source DB:  PubMed          Journal:  RNA        ISSN: 1355-8382            Impact factor:   4.942


  75 in total

1.  Participation of the C-terminal domain of RNA polymerase II in exon definition during pre-mRNA splicing.

Authors:  C Zeng; S M Berget
Journal:  Mol Cell Biol       Date:  2000-11       Impact factor: 4.272

2.  In vitro polyadenylation is stimulated by the presence of an upstream intron.

Authors:  M Niwa; S D Rose; S M Berget
Journal:  Genes Dev       Date:  1990-09       Impact factor: 11.361

3.  Mutation of the AAUAAA polyadenylation signal depresses in vitro splicing of proximal but not distal introns.

Authors:  M Niwa; S M Berget
Journal:  Genes Dev       Date:  1991-11       Impact factor: 11.361

4.  Polyadenylation-specific complexes undergo a transition early in the polymerization of a poly(A) tail.

Authors:  V J Bardwell; M Wickens
Journal:  Mol Cell Biol       Date:  1990-01       Impact factor: 4.272

5.  Two phases in the addition of a poly(A) tail.

Authors:  M D Sheets; M Wickens
Journal:  Genes Dev       Date:  1989-09       Impact factor: 11.361

Review 6.  Exon recognition in vertebrate splicing.

Authors:  S M Berget
Journal:  J Biol Chem       Date:  1995-02-10       Impact factor: 5.157

7.  Human pre-mRNA cleavage factor II(m) contains homologs of yeast proteins and bridges two other cleavage factors.

Authors:  H de Vries; U Rüegsegger; W Hübner; A Friedlein; H Langen; W Keller
Journal:  EMBO J       Date:  2000-11-01       Impact factor: 11.598

8.  The carboxyl terminus of vertebrate poly(A) polymerase interacts with U2AF 65 to couple 3'-end processing and splicing.

Authors:  S Vagner; C Vagner; I W Mattaj
Journal:  Genes Dev       Date:  2000-02-15       Impact factor: 11.361

9.  Conservation of the mammalian RNA polymerase II largest-subunit C-terminal domain.

Authors:  E Barron-Casella; J L Corden
Journal:  J Mol Evol       Date:  1992-11       Impact factor: 2.395

10.  Tracking COL1A1 RNA in osteogenesis imperfecta. splice-defective transcripts initiate transport from the gene but are retained within the SC35 domain.

Authors:  C Johnson; D Primorac; M McKinstry; J McNeil; D Rowe; J B Lawrence
Journal:  J Cell Biol       Date:  2000-08-07       Impact factor: 10.539

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  25 in total

1.  Co-transcriptional splicing of constitutive and alternative exons.

Authors:  Amy Pandya-Jones; Douglas L Black
Journal:  RNA       Date:  2009-08-05       Impact factor: 4.942

2.  Splicing kinetics and transcript release from the chromatin compartment limit the rate of Lipid A-induced gene expression.

Authors:  Amy Pandya-Jones; Dev M Bhatt; Chia-Ho Lin; Ann-Jay Tong; Stephen T Smale; Douglas L Black
Journal:  RNA       Date:  2013-04-24       Impact factor: 4.942

3.  Single-molecule imaging of transcriptionally coupled and uncoupled splicing.

Authors:  Diana Y Vargas; Khyati Shah; Mona Batish; Michael Levandoski; Sourav Sinha; Salvatore A E Marras; Paul Schedl; Sanjay Tyagi
Journal:  Cell       Date:  2011-11-23       Impact factor: 41.582

4.  Alternative splicing in spinal muscular atrophy underscores the role of an intron definition model.

Authors:  Natalia N Singh; Ravindra N Singh
Journal:  RNA Biol       Date:  2011-07-01       Impact factor: 4.652

5.  Nuclear retention of unspliced pre-mRNAs by mutant DHX16/hPRP2, a spliceosomal DEAH-box protein.

Authors:  Marieta Gencheva; Ting-Yu Lin; Xiwei Wu; Lixin Yang; Caroline Richard; Matthew Jones; Shwu-Bin Lin; Ren-Jang Lin
Journal:  J Biol Chem       Date:  2010-09-14       Impact factor: 5.157

6.  Poly(A) signal-dependent degradation of unprocessed nascent transcripts accompanies poly(A) signal-dependent transcriptional pausing in vitro.

Authors:  Amir Kazerouninia; Benson Ngo; Harold G Martinson
Journal:  RNA       Date:  2009-11-19       Impact factor: 4.942

Review 7.  Nuclear phosphoinositides: a signaling enigma wrapped in a compartmental conundrum.

Authors:  Christy A Barlow; Rakesh S Laishram; Richard A Anderson
Journal:  Trends Cell Biol       Date:  2009-10-19       Impact factor: 20.808

Review 8.  "Cotranscriptionality": the transcription elongation complex as a nexus for nuclear transactions.

Authors:  Roberto Perales; David Bentley
Journal:  Mol Cell       Date:  2009-10-23       Impact factor: 17.970

9.  Polyuridylylation and processing of transcripts from multiple gene minicircles in chloroplasts of the dinoflagellate Amphidinium carterae.

Authors:  Adrian C Barbrook; Richard G Dorrell; Jennifer Burrows; Lindsey J Plenderleith; R Ellen R Nisbet; Christopher J Howe
Journal:  Plant Mol Biol       Date:  2012-05-05       Impact factor: 4.076

10.  Regulation of transcription termination in the nematode Caenorhabditis elegans.

Authors:  Simon Haenni; Helen E Sharpe; Maria Gravato Nobre; Kerstin Zechner; Cathy Browne; Jonathan Hodgkin; André Furger
Journal:  Nucleic Acids Res       Date:  2009-09-09       Impact factor: 16.971

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