Literature DB >> 19301312

The puzzle of RNAs that target gene promoters.

Scott T Younger1, David R Corey.   

Abstract

Setting the right target: Most researchers who use small RNAs in mammalian cells assume that mRNA will be the target. Recent studies suggest that small RNAs can also target chromosomal DNA. Few discoveries have had the impact of RNAi. Most researchers who use small RNAs to control gene expression in mammalian cells assume that mRNA will be the target. Recent studies, however, have suggested that small RNAs can also target chromosomal DNA.

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Year:  2009        PMID： 19301312      PMCID： PMC2759896          DOI： 10.1002/cbic.200900015

Source DB:  PubMed          Journal:  Chembiochem        ISSN： 1439-4227            Impact factor:   3.164


  35 in total

1.  Argonaute2 is the catalytic engine of mammalian RNAi.

Authors:  Jidong Liu; Michelle A Carmell; Fabiola V Rivas; Carolyn G Marsden; J Michael Thomson; Ji-Joon Song; Scott M Hammond; Leemor Joshua-Tor; Gregory J Hannon
Journal:  Science       Date:  2004-07-29       Impact factor: 47.728

2.  Widespread occurrence of antisense transcription in the human genome.

Authors:  Rodrigo Yelin; Dvir Dahary; Rotem Sorek; Erez Y Levanon; Orly Goldstein; Avi Shoshan; Alex Diber; Sharon Biton; Yael Tamir; Rami Khosravi; Sergey Nemzer; Elhanan Pinner; Shira Walach; Jeanne Bernstein; Kinneret Savitsky; Galit Rotman
Journal:  Nat Biotechnol       Date:  2003-03-17       Impact factor: 54.908

3.  Requirement for Xist in X chromosome inactivation.

Authors:  G D Penny; G F Kay; S A Sheardown; S Rastan; N Brockdorff
Journal:  Nature       Date:  1996-01-11       Impact factor: 49.962

4.  Imprinted expression of the Igf2r gene depends on an intronic CpG island.

Authors:  A Wutz; O W Smrzka; N Schweifer; K Schellander; E F Wagner; D P Barlow
Journal:  Nature       Date:  1997-10-16       Impact factor: 49.962

5.  Small interfering RNA-induced transcriptional gene silencing in human cells.

Authors:  Kevin V Morris; Simon W-L Chan; Steven E Jacobsen; David J Looney
Journal:  Science       Date:  2004-08-05       Impact factor: 47.728

6.  The antisense transcriptomes of human cells.

Authors:  Yiping He; Bert Vogelstein; Victor E Velculescu; Nickolas Papadopoulos; Kenneth W Kinzler
Journal:  Science       Date:  2008-12-04       Impact factor: 47.728

7.  Induction of DNA methylation and gene silencing by short interfering RNAs in human cells.

Authors:  Hiroaki Kawasaki; Kazunari Taira
Journal:  Nature       Date:  2004-08-15       Impact factor: 49.962

8.  Human Argonaute2 mediates RNA cleavage targeted by miRNAs and siRNAs.

Authors:  Gunter Meister; Markus Landthaler; Agnieszka Patkaniowska; Yair Dorsett; Grace Teng; Thomas Tuschl
Journal:  Mol Cell       Date:  2004-07-23       Impact factor: 17.970

9.  The human XIST gene: analysis of a 17 kb inactive X-specific RNA that contains conserved repeats and is highly localized within the nucleus.

Authors:  C J Brown; B D Hendrich; J L Rupert; R G Lafrenière; Y Xing; J Lawrence; H F Willard
Journal:  Cell       Date:  1992-10-30       Impact factor: 41.582

10.  Two distinct estrogen-regulated promoters generate transcripts encoding the two functionally different human progesterone receptor forms A and B.

Authors:  P Kastner; A Krust; B Turcotte; U Stropp; L Tora; H Gronemeyer; P Chambon
Journal:  EMBO J       Date:  1990-05       Impact factor: 11.598
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  8 in total

Review 1.  Human RNAi pathway: crosstalk with organelles and cells.

Authors:  Sadegh Azimzadeh Jamalkandi; Esmaeel Azadian; Ali Masoudi-Nejad
Journal:  Funct Integr Genomics       Date:  2013-11-07       Impact factor: 3.410

2.  Nuclear and cytoplasmic localization of neural stem cell microRNAs.

Authors:  Clark D Jeffries; Howard M Fried; Diana O Perkins
Journal:  RNA       Date:  2011-03-01       Impact factor: 4.942

3.  Transcriptional regulation by miRNA mimics that target sequences downstream of gene termini.

Authors:  Scott T Younger; David R Corey
Journal:  Mol Biosyst       Date:  2011-05-18

4.  Inhibition of human BK polyomavirus replication by small noncoding RNAs.

Authors:  Irina Tikhanovich; Bo Liang; Cathal Seoighe; William R Folk; Heinz Peter Nasheuer
Journal:  J Virol       Date:  2011-05-04       Impact factor: 5.103

5.  Small interfering RNA-mediated translation repression alters ribosome sensitivity to inhibition by cycloheximide in Chlamydomonas reinhardtii.

Authors:  Xinrong Ma; Eun-Jeong Kim; Insun Kook; Fangrui Ma; Adam Voshall; Etsuko Moriyama; Heriberto Cerutti
Journal:  Plant Cell       Date:  2013-03-19       Impact factor: 11.277

6.  MicroRNA miR-324-3p induces promoter-mediated expression of RelA gene.

Authors:  Ashutosh Dharap; Courtney Pokrzywa; Shruthi Murali; Gopal Pandi; Raghu Vemuganti
Journal:  PLoS One       Date:  2013-11-12       Impact factor: 3.240

7.  Transfer and functional consequences of dietary microRNAs in vertebrates: concepts in search of corroboration: negative results challenge the hypothesis that dietary xenomiRs cross the gut and regulate genes in ingesting vertebrates, but important questions persist.

Authors:  Kenneth W Witwer; Kendal D Hirschi
Journal:  Bioessays       Date:  2014-01-16       Impact factor: 4.345

Review 8.  Classification of Transcription Boundary-Associated RNAs (TBARs) in Animals and Plants.

Authors:  Dongliang Yu; Xiaoxia Ma; Ziwei Zuo; Huizhong Wang; Yijun Meng
Journal:  Front Genet       Date:  2018-05-14       Impact factor: 4.599
  8 in total

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