Literature DB >> 19299536

Lowly expressed human microRNA genes evolve rapidly.

Han Liang, Wen-Hsiung Li.   

Abstract

To study the evolution of human microRNAs (miRNAs), we examined nucleotide variation in humans, sequence divergence between species, and genomic clustering patterns for miRNAs with different expression levels. We found that expression level is a major indicator of the rate of evolution and that approximately 30% of currently annotated human miRNA genes are almost free of selective pressure.

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Year:  2009        PMID: 19299536      PMCID: PMC2727378          DOI: 10.1093/molbev/msp053

Source DB:  PubMed          Journal:  Mol Biol Evol        ISSN: 0737-4038            Impact factor:   16.240


  22 in total

1.  dbSNP: the NCBI database of genetic variation.

Authors:  S T Sherry; M H Ward; M Kholodov; J Baker; L Phan; E M Smigielski; K Sirotkin
Journal:  Nucleic Acids Res       Date:  2001-01-01       Impact factor: 16.971

2.  Vertebrate microRNA genes.

Authors:  Lee P Lim; Margaret E Glasner; Soraya Yekta; Christopher B Burge; David P Bartel
Journal:  Science       Date:  2003-03-07       Impact factor: 47.728

Review 3.  MicroRNAs: genomics, biogenesis, mechanism, and function.

Authors:  David P Bartel
Journal:  Cell       Date:  2004-01-23       Impact factor: 41.582

4.  A microRNA controlling left/right neuronal asymmetry in Caenorhabditis elegans.

Authors:  Robert J Johnston; Oliver Hobert
Journal:  Nature       Date:  2003-12-14       Impact factor: 49.962

Review 5.  MicroRNA pathways in flies and worms: growth, death, fat, stress, and timing.

Authors:  Victor Ambros
Journal:  Cell       Date:  2003-06-13       Impact factor: 41.582

Review 6.  The functions of animal microRNAs.

Authors:  Victor Ambros
Journal:  Nature       Date:  2004-09-16       Impact factor: 49.962

7.  Aligning multiple genomic sequences with the threaded blockset aligner.

Authors:  Mathieu Blanchette; W James Kent; Cathy Riemer; Laura Elnitski; Arian F A Smit; Krishna M Roskin; Robert Baertsch; Kate Rosenbloom; Hiram Clawson; Eric D Green; David Haussler; Webb Miller
Journal:  Genome Res       Date:  2004-04       Impact factor: 9.043

8.  Conserved seed pairing, often flanked by adenosines, indicates that thousands of human genes are microRNA targets.

Authors:  Benjamin P Lewis; Christopher B Burge; David P Bartel
Journal:  Cell       Date:  2005-01-14       Impact factor: 41.582

9.  Microarray profiling of microRNAs reveals frequent coexpression with neighboring miRNAs and host genes.

Authors:  Scott Baskerville; David P Bartel
Journal:  RNA       Date:  2005-03       Impact factor: 4.942

10.  Fast evolution of core promoters in primate genomes.

Authors:  Han Liang; Yeong-Shin Lin; Wen-Hsiung Li
Journal:  Mol Biol Evol       Date:  2008-03-25       Impact factor: 16.240

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  52 in total

Review 1.  Genome-wide approaches in the study of microRNA biology.

Authors:  Melissa L Wilbert; Gene W Yeo
Journal:  Wiley Interdiscip Rev Syst Biol Med       Date:  2010-12-31

2.  Reply to evolutionary flux of canonical microRNAs and mirtrons in Drosophila.

Authors:  Jian Lu; Yang Shen; Richard W Carthew; San Ming Wang; Chung-I Wu
Journal:  Nat Genet       Date:  2010-01       Impact factor: 38.330

3.  Neutral evolution of robustness in Drosophila microRNA precursors.

Authors:  Nicholas Price; Reed A Cartwright; Niv Sabath; Dan Graur; Ricardo B R Azevedo
Journal:  Mol Biol Evol       Date:  2011-01-31       Impact factor: 16.240

Review 4.  General hallmarks of microRNAs in brain evolution and development.

Authors:  Wei Chen; Chuan Qin
Journal:  RNA Biol       Date:  2015       Impact factor: 4.652

Review 5.  Function and regulation of microRNA-31 in development and disease.

Authors:  Nadezda A Stepicheva; Jia L Song
Journal:  Mol Reprod Dev       Date:  2016-08-02       Impact factor: 2.609

6.  AMPKα modulation in cancer progression: multilayer integrative analysis of the whole transcriptome in Asian gastric cancer.

Authors:  Yon Hui Kim; Han Liang; Xiuping Liu; Ju-Seog Lee; Jae Yong Cho; Jae-Ho Cheong; Hoguen Kim; Min Li; Thomas J Downey; Matthew D Dyer; Yongming Sun; Jingtao Sun; Ellen M Beasley; Hyun Cheol Chung; Sung Hoon Noh; John N Weinstein; Chang-Gong Liu; Garth Powis
Journal:  Cancer Res       Date:  2012-03-20       Impact factor: 12.701

7.  microRNA evolution in a human transcription factor and microRNA regulatory network.

Authors:  Chengxiang Qiu; Juan Wang; Pengying Yao; Edwin Wang; Qinghua Cui
Journal:  BMC Syst Biol       Date:  2010-06-29

Review 8.  Human brain evolution: transcripts, metabolites and their regulators.

Authors:  Mehmet Somel; Xiling Liu; Philipp Khaitovich
Journal:  Nat Rev Neurosci       Date:  2013-01-17       Impact factor: 34.870

9.  Association genetics in Populus reveals the interactions between Pto-miR160a and its target Pto-ARF16.

Authors:  Jiaxing Tian; Jinhui Chen; Bailian Li; Deqiang Zhang
Journal:  Mol Genet Genomics       Date:  2016-01-05       Impact factor: 3.291

10.  Ago2 immunoprecipitation identifies predicted microRNAs in human embryonic stem cells and neural precursors.

Authors:  Loyal A Goff; Jonathan Davila; Mavis R Swerdel; Jennifer C Moore; Rick I Cohen; Hao Wu; Yi E Sun; Ronald P Hart
Journal:  PLoS One       Date:  2009-09-28       Impact factor: 3.240

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