Literature DB >> 12702767

The riboswitch-mediated control of sulfur metabolism in bacteria.

Vitaly Epshtein1, Alexander S Mironov, Evgeny Nudler.   

Abstract

Many operons in Gram-positive bacteria that are involved in methionine (Met) and cysteine (Cys) biosynthesis possess an evolutionarily conserved regulatory leader sequence (S-box) that positively controls these genes in response to methionine starvation. Here, we demonstrate that a feed-back regulation mechanism utilizes S-adenosyl-methionine as an effector. S-adenosyl-methionine directly and specifically binds to the nascent S-box RNA, causing an intrinsic terminator to form and interrupt transcription prematurely. The S-box leader RNA thus expands the family of newly discovered riboswitches, i.e., natural regulatory RNA aptamers that seem to sense small molecules ranging from amino acid derivatives to vitamins.

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Year:  2003        PMID: 12702767      PMCID: PMC154296          DOI: 10.1073/pnas.0531307100

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  19 in total

1.  The mechanism of intrinsic transcription termination.

Authors:  I Gusarov; E Nudler
Journal:  Mol Cell       Date:  1999-04       Impact factor: 17.970

2.  Global expression profile of Bacillus subtilis grown in the presence of sulfate or methionine.

Authors:  Sandrine Auger; Antoine Danchin; Isabelle Martin-Verstraete
Journal:  J Bacteriol       Date:  2002-09       Impact factor: 3.490

Review 3.  Regulation by transcription attenuation in bacteria: how RNA provides instructions for transcription termination/antitermination decisions.

Authors:  Tina M Henkin; Charles Yanofsky
Journal:  Bioessays       Date:  2002-08       Impact factor: 4.345

4.  Genetic control by a metabolite binding mRNA.

Authors:  Ali Nahvi; Narasimhan Sudarsan; Margaret S Ebert; Xiang Zou; Kenneth L Brown; Ronald R Breaker
Journal:  Chem Biol       Date:  2002-09

5.  Thiamine derivatives bind messenger RNAs directly to regulate bacterial gene expression.

Authors:  Wade Winkler; Ali Nahvi; Ronald R Breaker
Journal:  Nature       Date:  2002-10-16       Impact factor: 49.962

6.  Adenosylcobalamin inhibits ribosome binding to btuB RNA.

Authors:  X Nou; R J Kadner
Journal:  Proc Natl Acad Sci U S A       Date:  2000-06-20       Impact factor: 11.205

7.  A conserved RNA structure (thi box) is involved in regulation of thiamin biosynthetic gene expression in bacteria.

Authors:  J Miranda-Ríos; M Navarro; M Soberón
Journal:  Proc Natl Acad Sci U S A       Date:  2001-07-24       Impact factor: 11.205

8.  Prediction of gene function in methylthioadenosine recycling from regulatory signals.

Authors:  Brooke A Murphy; Frank J Grundy; Tina M Henkin
Journal:  J Bacteriol       Date:  2002-04       Impact factor: 3.490

9.  The metIC operon involved in methionine biosynthesis in Bacillus subtilis is controlled by transcription antitermination.

Authors:  Sandrine Auger; W H Yuen; Antoine Danchin; Isabelle Martin-Verstraete
Journal:  Microbiology       Date:  2002-02       Impact factor: 2.777

10.  Regulation of riboflavin biosynthesis and transport genes in bacteria by transcriptional and translational attenuation.

Authors:  Alexey G Vitreschak; Dmitry A Rodionov; Andrey A Mironov; Mikhail S Gelfand
Journal:  Nucleic Acids Res       Date:  2002-07-15       Impact factor: 16.971

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  99 in total

1.  Premature terminator analysis sheds light on a hidden world of bacterial transcriptional attenuation.

Authors:  Magali Naville; Daniel Gautheret
Journal:  Genome Biol       Date:  2010-09-29       Impact factor: 13.583

2.  Deleterious mutation prediction in the secondary structure of RNAs.

Authors:  Danny Barash
Journal:  Nucleic Acids Res       Date:  2003-11-15       Impact factor: 16.971

3.  Riboswitch finder--a tool for identification of riboswitch RNAs.

Authors:  Peter Bengert; Thomas Dandekar
Journal:  Nucleic Acids Res       Date:  2004-07-01       Impact factor: 16.971

4.  A theophylline responsive riboswitch based on helix slipping controls gene expression in vivo.

Authors:  Beatrix Suess; Barbara Fink; Christian Berens; Régis Stentz; Wolfgang Hillen
Journal:  Nucleic Acids Res       Date:  2004-03-05       Impact factor: 16.971

5.  Basis for ligand discrimination between ON and OFF state riboswitch conformations: the case of the SAM-I riboswitch.

Authors:  Vamsi Krishna Boyapati; Wei Huang; Jessica Spedale; Fareed Aboul-Ela
Journal:  RNA       Date:  2012-04-27       Impact factor: 4.942

Review 6.  Recognition of S-adenosylmethionine by riboswitches.

Authors:  Robert T Batey
Journal:  Wiley Interdiscip Rev RNA       Date:  2011-01-12       Impact factor: 9.957

Review 7.  Themes and variations in riboswitch structure and function.

Authors:  Alla Peselis; Alexander Serganov
Journal:  Biochim Biophys Acta       Date:  2014-02-28

Review 8.  Computational analysis of riboswitch-based regulation.

Authors:  Eric I Sun; Dmitry A Rodionov
Journal:  Biochim Biophys Acta       Date:  2014-02-28

9.  An mRNA structure in bacteria that controls gene expression by binding lysine.

Authors:  Narasimhan Sudarsan; J Kenneth Wickiser; Shingo Nakamura; Margaret S Ebert; Ronald R Breaker
Journal:  Genes Dev       Date:  2003-11-01       Impact factor: 11.361

Review 10.  RNA sensors: novel regulators of gene expression.

Authors:  Raymond Kaempfer
Journal:  EMBO Rep       Date:  2003-11       Impact factor: 8.807

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