Literature DB >> 19294349

tRNAs as regulators in gene expression.

Yan Li1, Hui Zhou.   

Abstract

Transfer RNAs (tRNAs) hold a central place in protein synthesis by interpreting the genetic information stored in DNA into the amino acid sequence of protein, thus functioning as "adaptor" molecules. In recent years, however, various studies have shown that tRNAs have additional functions beyond participating in protein synthesis. When suffering from certain nutritional stresses, tRNAs change the level of aminoacylation to became uncharged, and these uncharged tRNAs act as effector molecules to regulate global gene expression, so that the stressed organism copes with the adverse environmental stresses. In budding yeast and certain mammalian cells, the retrograde movement of mature tRNAs from cytoplasm to nucleus serves as a mechanism for the surveillance system within the nucleus to continue monitoring the integrity of tRNAs. On the other hand, this retrograde action effectively reduces the global protein synthesis level under conditions of nutritional starvation. Quite recently, various publications have shown that tRNAs are not stable molecules in an absolute sense. Under certain physiological or environmental stresses, they are specifically cleaved into fragments of different lengths in the anticodon loop or anticodon left arm. These cleavages are not a meaningless random degradation phenomenon. Instead, a novel class of signal molecules such as tRNA halves or sitRNAs may be produced, which are closely correlated with the modulation of global gene expression. Investigation of the regulatory functions of tRNAs is a frontier, which seeks to reveal the structural and functional diversity of tRNAs as well as their vital functions during the expression of genetic information.

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Year:  2009        PMID: 19294349     DOI: 10.1007/s11427-009-0039-y

Source DB:  PubMed          Journal:  Sci China C Life Sci        ISSN: 1006-9305


  14 in total

1.  Crystal structure and RNA binding properties of the RNA recognition motif (RRM) and AlkB domains in human AlkB homolog 8 (ABH8), an enzyme catalyzing tRNA hypermodification.

Authors:  Chiara Pastore; Irini Topalidou; Farhad Forouhar; Amy C Yan; Matthew Levy; John F Hunt
Journal:  J Biol Chem       Date:  2011-11-07       Impact factor: 5.157

Review 2.  Slicing tRNAs to boost functional ncRNA diversity.

Authors:  Jennifer Gebetsberger; Norbert Polacek
Journal:  RNA Biol       Date:  2013-11-21       Impact factor: 4.652

3.  tRF2Cancer: A web server to detect tRNA-derived small RNA fragments (tRFs) and their expression in multiple cancers.

Authors:  Ling-Ling Zheng; Wei-Lin Xu; Shun Liu; Wen-Ju Sun; Jun-Hao Li; Jie Wu; Jian-Hua Yang; Liang-Hu Qu
Journal:  Nucleic Acids Res       Date:  2016-05-13       Impact factor: 16.971

Review 4.  Role of the Ribonuclease ONCONASE in miRNA Biogenesis and tRNA Processing: Focus on Cancer and Viral Infections.

Authors:  Marta Menegazzi; Giovanni Gotte
Journal:  Int J Mol Sci       Date:  2022-06-12       Impact factor: 6.208

5.  Plant mitochondria use two pathways for the biogenesis of tRNAHis.

Authors:  Antonio Placido; François Sieber; Anthony Gobert; Raffaele Gallerani; Philippe Giegé; Laurence Maréchal-Drouard
Journal:  Nucleic Acids Res       Date:  2010-07-25       Impact factor: 16.971

6.  Extracellular vesicles shed by Trypanosoma cruzi are linked to small RNA pathways, life cycle regulation, and susceptibility to infection of mammalian cells.

Authors:  Maria R Garcia-Silva; Roberta Ferreira Cura das Neves; Florencia Cabrera-Cabrera; Julia Sanguinetti; Lia C Medeiros; Carlos Robello; Hugo Naya; Tamara Fernandez-Calero; Thais Souto-Padron; Wanderley de Souza; Alfonso Cayota
Journal:  Parasitol Res       Date:  2013-11-17       Impact factor: 2.289

Review 7.  RNA degradome--its biogenesis and functions.

Authors:  Paulina Jackowiak; Martyna Nowacka; Pawel M Strozycki; Marek Figlerowicz
Journal:  Nucleic Acids Res       Date:  2011-06-07       Impact factor: 16.971

8.  tRNAHis-guanylyltransferase establishes tRNAHis identity.

Authors:  Ilka U Heinemann; Akiyoshi Nakamura; Patrick O'Donoghue; Daniel Eiler; Dieter Söll
Journal:  Nucleic Acids Res       Date:  2011-09-02       Impact factor: 16.971

9.  A pseudo-tRNA modulates antibiotic resistance in Bacillus cereus.

Authors:  Theresa E Rogers; Sandro F Ataide; Kiley Dare; Assaf Katz; Stephanie Seveau; Hervé Roy; Michael Ibba
Journal:  PLoS One       Date:  2012-07-18       Impact factor: 3.240

10.  Identification of stable, high copy number, medium-sized RNA degradation intermediates that accumulate in plants under non-stress conditions.

Authors:  Martyna Nowacka; Pawel M Strozycki; Paulina Jackowiak; Anna Hojka-Osinska; Maciej Szymanski; Marek Figlerowicz
Journal:  Plant Mol Biol       Date:  2013-05-25       Impact factor: 4.076

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