Literature DB >> 19290866

Combining X-ray crystallography and single-crystal spectroscopy to probe enzyme mechanisms.

Arwen R Pearson1, Robin L Owen.   

Abstract

The combination of X-ray crystallography and rapid cryo-trapping methods has enabled the visualization of catalytic intermediates in a variety of enzyme systems. However, the resolution of the X-ray experiment is not always sufficient to precisely place the structure on the reaction pathway. In addition, many trapped intermediates are X-ray-sensitive and can decay during diffraction data collection, resulting in a final structure that may not be representative of the initial trapped species. Complementary methods, such as single-crystal spectroscopy, provide a means to precisely identify the cryo-trapped species as well as detect any X-ray-induced changes during diffraction data collection.

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Year:  2009        PMID: 19290866     DOI: 10.1042/BST0370378

Source DB:  PubMed          Journal:  Biochem Soc Trans        ISSN: 0300-5127            Impact factor:   5.407


  11 in total

1.  Lysine relay mechanism coordinates intermediate transfer in vitamin B6 biosynthesis.

Authors:  Matthew J Rodrigues; Volker Windeisen; Yang Zhang; Gabriela Guédez; Stefan Weber; Marco Strohmeier; Jeremiah W Hanes; Antoine Royant; Gwyndaf Evans; Irmgard Sinning; Steven E Ealick; Tadhg P Begley; Ivo Tews
Journal:  Nat Chem Biol       Date:  2017-01-16       Impact factor: 15.040

Review 2.  Correlated single-crystal electronic absorption spectroscopy and X-ray crystallography at NSLS beamline X26-C.

Authors:  Allen M Orville; Richard Buono; Matt Cowan; Annie Héroux; Grace Shea-McCarthy; Dieter K Schneider; John M Skinner; Michael J Skinner; Deborah Stoner-Ma; Robert M Sweet
Journal:  J Synchrotron Radiat       Date:  2011-03-19       Impact factor: 2.616

3.  Capturing the reaction pathway in near-atomic-resolution crystal structures of HIV-1 protease.

Authors:  Chen-Hsiang Shen; Yunfeng Tie; Xiaxia Yu; Yuan-Fang Wang; Andrey Y Kovalevsky; Robert W Harrison; Irene T Weber
Journal:  Biochemistry       Date:  2012-09-21       Impact factor: 3.162

4.  X-ray-excited optical luminescence of protein crystals: a new tool for studying radiation damage during diffraction data collection.

Authors:  Robin L Owen; Briony A Yorke; Arwen R Pearson
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2012-04-17

Review 5.  Modelling single-molecule kinetics of helicase translocation using high-resolution nanopore tweezers (SPRNT).

Authors:  Jonathan M Craig; Andrew H Laszlo; Ian C Nova; Jens H Gundlach
Journal:  Essays Biochem       Date:  2021-04-16       Impact factor: 8.000

6.  Revealing low-dose radiation damage using single-crystal spectroscopy.

Authors:  Robin L Owen; Briony A Yorke; James A Gowdy; Arwen R Pearson
Journal:  J Synchrotron Radiat       Date:  2011-03-19       Impact factor: 2.616

Review 7.  From protein structure to function via single crystal optical spectroscopy.

Authors:  Luca Ronda; Stefano Bruno; Stefano Bettati; Paola Storici; Andrea Mozzarelli
Journal:  Front Mol Biosci       Date:  2015-04-28

8.  A new on-axis micro-spectrophotometer for combining Raman, fluorescence and UV/Vis absorption spectroscopy with macromolecular crystallography at the Swiss Light Source.

Authors:  Guillaume Pompidor; Florian S N Dworkowski; Vincent Thominet; Clemens Schulze-Briese; Martin R Fuchs
Journal:  J Synchrotron Radiat       Date:  2013-07-05       Impact factor: 2.616

9.  Towards accurate structural characterization of metal centres in protein crystals: the structures of Ni and Cu T(6) bovine insulin derivatives.

Authors:  Christian Grundahl Frankaer; Susanne Mossin; Kenny Ståhl; Pernille Harris
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2013-12-24

10.  A nearly on-axis spectroscopic system for simultaneously measuring UV-visible absorption and X-ray diffraction in the SPring-8 structural genomics beamline.

Authors:  Miyuki Sakaguchi; Tetsunari Kimura; Takuma Nishida; Takehiko Tosha; Hiroshi Sugimoto; Yoshihiro Yamaguchi; Sachiko Yanagisawa; Go Ueno; Hironori Murakami; Hideo Ago; Masaki Yamamoto; Takashi Ogura; Yoshitsugu Shiro; Minoru Kubo
Journal:  J Synchrotron Radiat       Date:  2016-01-01       Impact factor: 2.616

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