Literature DB >> 19290661

Overhauser dynamic nuclear polarization to study local water dynamics.

Brandon D Armstrong1, Songi Han.   

Abstract

Surface and internal water dynamics of molecules and soft matter are of great relevance to their structure and function, yet the experimental determination under ambient and steady-state conditions is challenging. One of the most powerful approaches to measure local water dynamics within 5 A distances is to utilize the modulation of the nuclear spin relaxation rate of water protons through their time-dependent dipolar coupling to paramagnetic probes, here nitroxide spin labels. We recently introduced a method to obtain local water dynamics through Overhauser dynamic nuclear polarization (DNP). This has a unique advantage over other related techniques available in that a highly amplified proton nuclear magnetic resonance signal carries the information, allowing the use of minute microliter sample volumes and 100 muM sample concentrations. The outcome of our approach is the quantitative determination of the key DNP parameter known as the coupling factor, which provides local translational diffusion dynamics of the solvent within 5 A of the spin label. In contrast to recent reports that the coupling factor for nitroxide radicals cannot be quantified due to the difficulty in determining the saturation factor for the spin label, we show the saturation factor can be accurately determined and for the first time present agreement between measurements and theory. We discuss the discrepancy between the related field cycling relaxometery technique and DNP in determining the coupling factor and present arguments in support of the DNP-determined value. DNP measurements of local hydration dynamics around nitroxides in bulk water and on the surface of proteins are presented.

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Year:  2009        PMID: 19290661     DOI: 10.1021/ja809259q

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  42 in total

1.  Protein structural and surface water rearrangement constitute major events in the earliest aggregation stages of tau.

Authors:  Anna Pavlova; Chi-Yuan Cheng; Maia Kinnebrew; John Lew; Frederick W Dahlquist; Songi Han
Journal:  Proc Natl Acad Sci U S A       Date:  2015-12-28       Impact factor: 11.205

2.  Hydration dynamics as an intrinsic ruler for refining protein structure at lipid membrane interfaces.

Authors:  Chi-Yuan Cheng; Jobin Varkey; Mark R Ambroso; Ralf Langen; Songi Han
Journal:  Proc Natl Acad Sci U S A       Date:  2013-09-30       Impact factor: 11.205

3.  Site-specific dynamic nuclear polarization of hydration water as a generally applicable approach to monitor protein aggregation.

Authors:  Anna Pavlova; Evan R McCarney; Dylan W Peterson; Frederick W Dahlquist; John Lew; Songi Han
Journal:  Phys Chem Chem Phys       Date:  2009-06-29       Impact factor: 3.676

4.  Structural insight into proteorhodopsin oligomers.

Authors:  Katherine M Stone; Jeda Voska; Maia Kinnebrew; Anna Pavlova; Matthias J N Junk; Songi Han
Journal:  Biophys J       Date:  2013-01-22       Impact factor: 4.033

5.  Effects of Dimethyl Sulfoxide on Surface Water near Phospholipid Bilayers.

Authors:  Yuno Lee; Philip A Pincus; Changbong Hyeon
Journal:  Biophys J       Date:  2016-12-06       Impact factor: 4.033

6.  Observation of strongly forbidden solid effect dynamic nuclear polarization transitions via electron-electron double resonance detected NMR.

Authors:  Albert A Smith; Björn Corzilius; Olesya Haze; Timothy M Swager; Robert G Griffin
Journal:  J Chem Phys       Date:  2013-12-07       Impact factor: 3.488

7.  Cholesterol enhances surface water diffusion of phospholipid bilayers.

Authors:  Chi-Yuan Cheng; Luuk L C Olijve; Ravinath Kausik; Songi Han
Journal:  J Chem Phys       Date:  2014-12-14       Impact factor: 3.488

Review 8.  The dark energy of proteins comes to light: conformational entropy and its role in protein function revealed by NMR relaxation.

Authors:  A Joshua Wand
Journal:  Curr Opin Struct Biol       Date:  2012-12-13       Impact factor: 6.809

9.  Quantitative analysis of molecular transport across liposomal bilayer by J-mediated 13C Overhauser dynamic nuclear polarization.

Authors:  Chi-Yuan Cheng; Olga J G M Goor; Songi Han
Journal:  Anal Chem       Date:  2012-10-23       Impact factor: 6.986

10.  Anomalously Rapid Hydration Water Diffusion Dynamics Near DNA Surfaces.

Authors:  John M Franck; Yuan Ding; Katherine Stone; Peter Z Qin; Songi Han
Journal:  J Am Chem Soc       Date:  2015-09-10       Impact factor: 15.419

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