Literature DB >> 19289034

The tethered infinitesimal tori and spheres algorithm: a versatile calculator for axisymmetric problems in equilibrium membrane mechanics.

Gerald H W Lim1, Greg Huber.   

Abstract

Constrained minimization of energy functionals is a central part, and usually the difficult part, of solving problems in the equilibrium mechanics of biological and biomimetic membranes. The inherent difficulties of the conventional variational-calculus approach prevents the numerical calculation involved from being made routine in the analyses of experimental results. We have developed a simulated annealing-based computational technique for routinizing the task of constrained minimization of energy functionals governing whole, or small patches of whole, fluid membranes with axisymmetry, spherical topology, and no domains of inhomogeneity. In this article, we describe the essential principles of the technique and apply it to five examples to demonstrate its versatility. It gives membrane shapes that are automatically stable to axisymmetric perturbations. Presently, it can account for constraints on 1), the membrane area or the effective membrane tension; 2), the enclosed volume or the effective pressure difference across the membrane thickness; and 3), the axial end-to-end distance or the applied axial point force.

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Year:  2009        PMID: 19289034      PMCID: PMC2717259          DOI: 10.1016/j.bpj.2008.10.074

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  24 in total

1.  Membrane tether formation from blebbing cells.

Authors:  J Dai; M P Sheetz
Journal:  Biophys J       Date:  1999-12       Impact factor: 4.033

2.  Vesicle deformation by an axial load: from elongated shapes to tethered vesicles.

Authors:  V Heinrich; B Bozic; S Svetina; B Zeks
Journal:  Biophys J       Date:  1999-04       Impact factor: 4.033

3.  Echinocyte shapes: bending, stretching, and shear determine spicule shape and spacing.

Authors:  Ranjan Mukhopadhyay; Gerald Lim H W; Michael Wortis
Journal:  Biophys J       Date:  2002-04       Impact factor: 4.033

4.  Stomatocyte-discocyte-echinocyte sequence of the human red blood cell: evidence for the bilayer- couple hypothesis from membrane mechanics.

Authors:  Gerald Lim H W; Michael Wortis; Ranjan Mukhopadhyay
Journal:  Proc Natl Acad Sci U S A       Date:  2002-12-06       Impact factor: 11.205

5.  Formation and interaction of membrane tubes.

Authors:  Imre Derényi; Frank Jülicher; Jacques Prost
Journal:  Phys Rev Lett       Date:  2002-05-28       Impact factor: 9.161

6.  Elastic deformation of a fluid membrane upon colloid binding.

Authors:  Markus Deserno
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2004-03-12

7.  Formation and maintenance of tubular membrane projections require mechanical force, but their elongation and shortening do not require additional force.

Authors:  Takehiko Inaba; Akihiko Ishijima; Makoto Honda; Fumimasa Nomura; Kingo Takiguchi; Hirokazu Hotani
Journal:  J Mol Biol       Date:  2005-04-29       Impact factor: 5.469

8.  Vesicle shape, molecular tilt, and the suppression of necks.

Authors:  Hongyuan Jiang; Greg Huber; Robert A Pelcovits; Thomas R Powers
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2007-09-11

9.  Mechanical properties of pore-spanning lipid bilayers probed by atomic force microscopy.

Authors:  Siegfried Steltenkamp; Martin Michael Müller; Markus Deserno; Christian Hennesthal; Claudia Steinem; Andreas Janshoff
Journal:  Biophys J       Date:  2006-04-14       Impact factor: 4.033

10.  The secretion-coupled endocytosis correlates with membrane tension changes in RBL 2H3 cells.

Authors:  J Dai; H P Ting-Beall; M P Sheetz
Journal:  J Gen Physiol       Date:  1997-07       Impact factor: 4.086

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  2 in total

1.  Physical determinants of bipolar mitotic spindle assembly and stability in fission yeast.

Authors:  Robert Blackwell; Christopher Edelmaier; Oliver Sweezy-Schindler; Adam Lamson; Zachary R Gergely; Eileen O'Toole; Ammon Crapo; Loren E Hough; J Richard McIntosh; Matthew A Glaser; Meredith D Betterton
Journal:  Sci Adv       Date:  2017-01-20       Impact factor: 14.136

2.  Kinesin-8 effects on mitotic microtubule dynamics contribute to spindle function in fission yeast.

Authors:  Zachary R Gergely; Ammon Crapo; Loren E Hough; J Richard McIntosh; Meredith D Betterton
Journal:  Mol Biol Cell       Date:  2016-05-04       Impact factor: 4.138

  2 in total

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