Literature DB >> 19282480

Synthesis of programmable integrases.

Russell M Gordley1, Charles A Gersbach, Carlos F Barbas.   

Abstract

Accurate modification of the 3 billion-base-pair human genome requires tools with exceptional sequence specificity. Here, we describe a general strategy for the design of enzymes that target a single site within the genome. We generated chimeric zinc finger recombinases with cooperative DNA-binding and catalytic specificities that integrate transgenes with >98% accuracy into the human genome. These modular recombinases can be reprogrammed: New combinations of zinc finger domains and serine recombinase catalytic domains generate novel enzymes with distinct substrate sequence specificities. Because of their accuracy and versatility, the recombinases/integrases reported in this work are suitable for a wide variety of applications in biological research, medicine, and biotechnology where accurate delivery of DNA is desired.

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Year:  2009        PMID: 19282480      PMCID: PMC2654808          DOI: 10.1073/pnas.0812502106

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  43 in total

1.  Zinc-finger protein-targeted gene regulation: genomewide single-gene specificity.

Authors:  Siyuan Tan; Dmitry Guschin; Albert Davalos; Ya-Li Lee; Andrew W Snowden; Yann Jouvenot; H Steven Zhang; Katherine Howes; Andrew R McNamara; Albert Lai; Chris Ullman; Lindsey Reynolds; Michael Moore; Mark Isalan; Lutz-Peter Berg; Bradley Campos; Hong Qi; S Kaye Spratt; Casey C Case; Carl O Pabo; Judith Campisi; Philip D Gregory
Journal:  Proc Natl Acad Sci U S A       Date:  2003-09-26       Impact factor: 11.205

2.  Genomic targeting with a positive-selection lox integration vector allows highly reproducible gene expression in mammalian cells.

Authors:  S Fukushige; B Sauer
Journal:  Proc Natl Acad Sci U S A       Date:  1992-09-01       Impact factor: 11.205

3.  How restriction enzymes became the workhorses of molecular biology.

Authors:  Richard J Roberts
Journal:  Proc Natl Acad Sci U S A       Date:  2005-04-19       Impact factor: 11.205

4.  Advanced mammalian gene transfer: high titre retroviral vectors with multiple drug selection markers and a complementary helper-free packaging cell line.

Authors:  J P Morgenstern; H Land
Journal:  Nucleic Acids Res       Date:  1990-06-25       Impact factor: 16.971

5.  Crystal structure of the site-specific recombinase gamma delta resolvase complexed with a 34 bp cleavage site.

Authors:  W Yang; T A Steitz
Journal:  Cell       Date:  1995-07-28       Impact factor: 41.582

6.  Cin-mediated recombination at secondary crossover sites on the Escherichia coli chromosome.

Authors:  F W Rozsa; P Viollier; M Fussenegger; R Hiestand-Nauer; W Arber
Journal:  J Bacteriol       Date:  1995-03       Impact factor: 3.490

7.  Highly efficient endogenous human gene correction using designed zinc-finger nucleases.

Authors:  Fyodor D Urnov; Jeffrey C Miller; Ya-Li Lee; Christian M Beausejour; Jeremy M Rock; Sheldon Augustus; Andrew C Jamieson; Matthew H Porteus; Philip D Gregory; Michael C Holmes
Journal:  Nature       Date:  2005-04-03       Impact factor: 49.962

8.  Mutants of Tn3 resolvase which do not require accessory binding sites for recombination activity.

Authors:  P H Arnold; D G Blake; N D Grindley; M R Boocock; W M Stark
Journal:  EMBO J       Date:  1999-03-01       Impact factor: 11.598

9.  LMO2-associated clonal T cell proliferation in two patients after gene therapy for SCID-X1.

Authors:  S Hacein-Bey-Abina; C Von Kalle; M Schmidt; M P McCormack; N Wulffraat; P Leboulch; A Lim; C S Osborne; R Pawliuk; E Morillon; R Sorensen; A Forster; P Fraser; J I Cohen; G de Saint Basile; I Alexander; U Wintergerst; T Frebourg; A Aurias; D Stoppa-Lyonnet; S Romana; I Radford-Weiss; F Gross; F Valensi; E Delabesse; E Macintyre; F Sigaux; J Soulier; L E Leiva; M Wissler; C Prinz; T H Rabbitts; F Le Deist; A Fischer; M Cavazzana-Calvo
Journal:  Science       Date:  2003-10-17       Impact factor: 47.728

10.  Isolation and characterization of unusual gin mutants.

Authors:  A Klippel; K Cloppenborg; R Kahmann
Journal:  EMBO J       Date:  1988-12-01       Impact factor: 11.598

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  45 in total

1.  Design of single-stranded nucleic acid binding peptides based on nucleocapsid CCHC-box zinc-binding domains.

Authors:  Anthony L Guerrerio; Jeremy M Berg
Journal:  J Am Chem Soc       Date:  2010-07-21       Impact factor: 15.419

2.  Structure-guided reprogramming of serine recombinase DNA sequence specificity.

Authors:  Thomas Gaj; Andrew C Mercer; Charles A Gersbach; Russell M Gordley; Carlos F Barbas
Journal:  Proc Natl Acad Sci U S A       Date:  2010-12-27       Impact factor: 11.205

3.  Manipulating piggyBac transposon chromosomal integration site selection in human cells.

Authors:  Claudia Kettlun; Daniel L Galvan; Alfred L George; Aparna Kaja; Matthew H Wilson
Journal:  Mol Ther       Date:  2011-07-05       Impact factor: 11.454

4.  RNA-Guided Recombinase-Cas9 Fusion Targets Genomic DNA Deletion and Integration.

Authors:  Kylie Standage-Beier; Nicholas Brookhouser; Parithi Balachandran; Qi Zhang; David A Brafman; Xiao Wang
Journal:  CRISPR J       Date:  2019-08

5.  Synthetic circuits integrating logic and memory in living cells.

Authors:  Piro Siuti; John Yazbek; Timothy K Lu
Journal:  Nat Biotechnol       Date:  2013-02-10       Impact factor: 54.908

6.  Directed evolution of an enhanced and highly efficient FokI cleavage domain for zinc finger nucleases.

Authors:  Jing Guo; Thomas Gaj; Carlos F Barbas
Journal:  J Mol Biol       Date:  2010-05-04       Impact factor: 5.469

7.  Bottom-up approaches in synthetic biology and biomaterials for tissue engineering applications.

Authors:  Mitchell S Weisenberger; Tara L Deans
Journal:  J Ind Microbiol Biotechnol       Date:  2018-03-19       Impact factor: 3.346

8.  Directed evolution of recombinase specificity by split gene reassembly.

Authors:  Charles A Gersbach; Thomas Gaj; Russell M Gordley; Carlos F Barbas
Journal:  Nucleic Acids Res       Date:  2010-03-01       Impact factor: 16.971

9.  Zinc-finger nuclease-driven targeted integration into mammalian genomes using donors with limited chromosomal homology.

Authors:  Salvatore J Orlando; Yolanda Santiago; Russell C DeKelver; Yevgeniy Freyvert; Elizabeth A Boydston; Erica A Moehle; Vivian M Choi; Sunita M Gopalan; Jacqueline F Lou; James Li; Jeffrey C Miller; Michael C Holmes; Philip D Gregory; Fyodor D Urnov; Gregory J Cost
Journal:  Nucleic Acids Res       Date:  2010-06-08       Impact factor: 16.971

10.  Selection of bacteriophage lambda integrases with altered recombination specificity by in vitro compartmentalization.

Authors:  Yvonne Tay; Candice Ho; Peter Droge; Farid J Ghadessy
Journal:  Nucleic Acids Res       Date:  2009-12-04       Impact factor: 16.971

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