Literature DB >> 19282283

Interdomain flexibility in full-length matrix metalloproteinase-1 (MMP-1).

Ivano Bertini1, Marco Fragai, Claudio Luchinat, Maxime Melikian, Efstratios Mylonas, Niko Sarti, Dmitri I Svergun.   

Abstract

The presence of extensive reciprocal conformational freedom between the catalytic and the hemopexin-like domains of full-length matrix metalloproteinase-1 (MMP-1) is demonstrated by NMR and small angle x-ray scattering experiments. This finding is discussed in relation to the essentiality of the hemopexin-like domain for the collagenolytic activity of MMP-1. The conformational freedom experienced by the present system, having the shortest linker between the two domains, when compared with similar findings on MMP-12 and MMP-9 having longer and the longest linker within the family, respectively, suggests this type of conformational freedom to be a general property of all MMPs.

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Year:  2009        PMID: 19282283      PMCID: PMC2676012          DOI: 10.1074/jbc.M809627200

Source DB:  PubMed          Journal:  J Biol Chem        ISSN: 0021-9258            Impact factor:   5.157


  58 in total

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Authors:  Robert Visse; Hideaki Nagase
Journal:  Circ Res       Date:  2003-05-02       Impact factor: 17.367

2.  X-ray structures of binary and ternary enzyme-product-inhibitor complexes of matrix metalloproteinases.

Authors:  Ivano Bertini; Vito Calderone; Marco Fragai; Claudio Luchinat; Stefano Mangani; Beatrice Terni
Journal:  Angew Chem Int Ed Engl       Date:  2003-06-16       Impact factor: 15.336

Review 3.  Structural basis of the matrix metalloproteinases and their physiological inhibitors, the tissue inhibitors of metalloproteinases.

Authors:  Wolfram Bode; Klaus Maskos
Journal:  Biol Chem       Date:  2003-06       Impact factor: 3.915

Review 4.  Matrix metalloproteinases and collagen catabolism.

Authors:  Janelle L Lauer-Fields; Darius Juska; Gregg B Fields
Journal:  Biopolymers       Date:  2002       Impact factor: 2.505

5.  Paramagnetic metal ions in ligand screening: the Co(II) matrix metalloproteinase 12.

Authors:  Ivano Bertini; Marco Fragai; Yong-Min Lee; Claudio Luchinat; Beatrice Terni
Journal:  Angew Chem Int Ed Engl       Date:  2004-04-19       Impact factor: 15.336

6.  Bioinformatic comparison of structures and homology-models of matrix metalloproteinases.

Authors:  Claudia Andreini; Lucia Banci; Ivano Bertini; Claudio Luchinat; Antonio Rosato
Journal:  J Proteome Res       Date:  2004 Jan-Feb       Impact factor: 4.466

7.  Collagenase unwinds triple-helical collagen prior to peptide bond hydrolysis.

Authors:  Linda Chung; Deendayal Dinakarpandian; Naoto Yoshida; Janelle L Lauer-Fields; Gregg B Fields; Robert Visse; Hideaki Nagase
Journal:  EMBO J       Date:  2004-07-15       Impact factor: 11.598

8.  Structures of rat and human islet amyloid polypeptide IAPP(1-19) in micelles by NMR spectroscopy.

Authors:  Ravi Prakash Reddy Nanga; Jeffrey R Brender; Jiadi Xu; Gianluigi Veglia; Ayyalusamy Ramamoorthy
Journal:  Biochemistry       Date:  2008-12-02       Impact factor: 3.162

9.  Collagen binding properties of the membrane type-1 matrix metalloproteinase (MT1-MMP) hemopexin C domain. The ectodomain of the 44-kDa autocatalytic product of MT1-MMP inhibits cell invasion by disrupting native type I collagen cleavage.

Authors:  Eric M Tam; Yi I Wu; Georgina S Butler; M Sharon Stack; Christopher M Overall
Journal:  J Biol Chem       Date:  2002-07-26       Impact factor: 5.157

10.  Mapping of the binding site on pseudoazurin in the transient 152 kDa complex with nitrite reductase.

Authors:  Antonietta Impagliazzo; Marcellus Ubbink
Journal:  J Am Chem Soc       Date:  2004-05-12       Impact factor: 15.419

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  29 in total

1.  The collagenolytic action of MMP-1 is regulated by the interaction between the catalytic domain and the hinge region.

Authors:  Giovanni Francesco Fasciglione; Magda Gioia; Hiroki Tsukada; Jian Liang; Riccardo Iundusi; Umberto Tarantino; Massimo Coletta; Tayebeh Pourmotabbed; Stefano Marini
Journal:  J Biol Inorg Chem       Date:  2012-03-10       Impact factor: 3.358

2.  MaxOcc: a web portal for maximum occurrence analysis.

Authors:  Ivano Bertini; Lucio Ferella; Claudio Luchinat; Giacomo Parigi; Maxim V Petoukhov; Enrico Ravera; Antonio Rosato; Dmitri I Svergun
Journal:  J Biomol NMR       Date:  2012-05-26       Impact factor: 2.835

3.  Examination of matrix metalloproteinase-1 in solution: a preference for the pre-collagenolysis state.

Authors:  Linda Cerofolini; Gregg B Fields; Marco Fragai; Carlos F G C Geraldes; Claudio Luchinat; Giacomo Parigi; Enrico Ravera; Dmitri I Svergun; João M C Teixeira
Journal:  J Biol Chem       Date:  2013-09-11       Impact factor: 5.157

4.  Structural characterization of human S100A16, a low-affinity calcium binder.

Authors:  Elena Babini; Ivano Bertini; Valentina Borsi; Vito Calderone; Xiaoyu Hu; Claudio Luchinat; Giacomo Parigi
Journal:  J Biol Inorg Chem       Date:  2010-11-03       Impact factor: 3.358

5.  Effect of interdomain dynamics on the structure determination of modular proteins by small-angle scattering.

Authors:  Pau Bernadó
Journal:  Eur Biophys J       Date:  2009-10-21       Impact factor: 1.733

6.  Functional dynamics in replication protein A DNA binding and protein recruitment domains.

Authors:  Chris A Brosey; Sarah E Soss; Sonja Brooks; Chunli Yan; Ivaylo Ivanov; Kavita Dorai; Walter J Chazin
Journal:  Structure       Date:  2015-05-21       Impact factor: 5.006

Review 7.  Biophysical studies of matrix metalloproteinase/triple-helix complexes.

Authors:  Gregg B Fields
Journal:  Adv Protein Chem Struct Biol       Date:  2014-11-07       Impact factor: 3.507

Review 8.  Matrix metalloproteinase collagenolysis in health and disease.

Authors:  Sabrina Amar; Lyndsay Smith; Gregg B Fields
Journal:  Biochim Biophys Acta Mol Cell Res       Date:  2017-04-26       Impact factor: 4.739

Review 9.  Interstitial collagen catabolism.

Authors:  Gregg B Fields
Journal:  J Biol Chem       Date:  2013-02-19       Impact factor: 5.157

10.  The role of collagen charge clusters in the modulation of matrix metalloproteinase activity.

Authors:  Janelle L Lauer; Manishabrata Bhowmick; Dorota Tokmina-Roszyk; Yan Lin; Steven R Van Doren; Gregg B Fields
Journal:  J Biol Chem       Date:  2013-12-02       Impact factor: 5.157

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