Literature DB >> 19280429

Nuclear RNA surveillance: no sign of substrates tailing off.

James T Anderson1, Xuying Wang.   

Abstract

The production of cellular RNAs is tightly regulated to ensure gene expression is limited to appropriate times and locations. Elimination of RNA can be rapid and programmed to quickly terminate gene expression, or can be used to purge old, damaged or inappropriately formed RNAs. It is elimination of RNAs through the action of a polyadenylation complex (TRAMP), first described in the yeast Saccharomyces cerevisiae, which is the focus of this review. The discovery of TRAMP and presence of orthologs in most eukaryotes, along with an increasing number of potential TRAMP substrates in the form of new small non-coding RNAs, many of which emanate from areas of genomes once thought transcriptionally silent; promise to make this area of research of great interest for the foreseeable future.

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Year:  2009        PMID: 19280429     DOI: 10.1080/10409230802640218

Source DB:  PubMed          Journal:  Crit Rev Biochem Mol Biol        ISSN: 1040-9238            Impact factor:   8.250


  35 in total

1.  Nuclear import of cytoplasmic poly(A) binding protein restricts gene expression via hyperadenylation and nuclear retention of mRNA.

Authors:  G Renuka Kumar; Britt A Glaunsinger
Journal:  Mol Cell Biol       Date:  2010-09-07       Impact factor: 4.272

2.  The crystal structure of Mtr4 reveals a novel arch domain required for rRNA processing.

Authors:  Ryan N Jackson; A Alejandra Klauer; Bradley J Hintze; Howard Robinson; Ambro van Hoof; Sean J Johnson
Journal:  EMBO J       Date:  2010-05-28       Impact factor: 11.598

3.  Yeast Nrd1, Nab3, and Sen1 transcriptome-wide binding maps suggest multiple roles in post-transcriptional RNA processing.

Authors:  Nuttara Jamonnak; Tyler J Creamer; Miranda M Darby; Paul Schaughency; Sarah J Wheelan; Jeffry L Corden
Journal:  RNA       Date:  2011-09-27       Impact factor: 4.942

4.  RNA unwinding by the Trf4/Air2/Mtr4 polyadenylation (TRAMP) complex.

Authors:  Huijue Jia; Xuying Wang; James T Anderson; Eckhard Jankowsky
Journal:  Proc Natl Acad Sci U S A       Date:  2012-04-24       Impact factor: 11.205

Review 5.  New perspectives on the diversification of the RNA interference system: insights from comparative genomics and small RNA sequencing.

Authors:  Alexander Maxwell Burroughs; Yoshinari Ando; L Aravind
Journal:  Wiley Interdiscip Rev RNA       Date:  2013-12-05       Impact factor: 9.957

Review 6.  Ski2-like RNA helicase structures: common themes and complex assemblies.

Authors:  Sean J Johnson; Ryan N Jackson
Journal:  RNA Biol       Date:  2012-09-20       Impact factor: 4.652

Review 7.  Nuclear noncoding RNA surveillance: is the end in sight?

Authors:  Sandra L Wolin; Soyeong Sim; Xinguo Chen
Journal:  Trends Genet       Date:  2012-04-02       Impact factor: 11.639

Review 8.  Evolutionary conservation and expression of human RNA-binding proteins and their role in human genetic disease.

Authors:  Stefanie Gerstberger; Markus Hafner; Manuel Ascano; Thomas Tuschl
Journal:  Adv Exp Med Biol       Date:  2014       Impact factor: 2.622

9.  The Saccharomyces cerevisiae Nrd1-Nab3 transcription termination pathway acts in opposition to Ras signaling and mediates response to nutrient depletion.

Authors:  Miranda M Darby; Leo Serebreni; Xuewen Pan; Jef D Boeke; Jeffry L Corden
Journal:  Mol Cell Biol       Date:  2012-03-19       Impact factor: 4.272

Review 10.  Virus-mediated mRNA decay by hyperadenylation.

Authors:  Kevin J Sokoloski; Emily L Chaskey; Jeffrey Wilusz
Journal:  Genome Biol       Date:  2009-08-11       Impact factor: 13.583

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