Literature DB >> 19277730

Importance of oligomerisation on Pseudomonas aeruginosaLectin-II binding affinity. In silico and in vitro mutagenesis.

Michaela Wimmerová1, Navnit Kumar Mishra, Martina Pokorná, Jaroslav Koca.   

Abstract

The effect of terminal GLY114* deletion on the binding affinity of the PA-IIL lectin toward L: -fucose was investigated. Both experimental (isothermal titration calorimetry) and computational (molecular dynamics simulations) methods have shown that the deletion mutation decreases the L-fucose affinity. It implies that the PA-IIL saccharide binding affinity is influenced by the dimerization of the lectin. A detailed analysis of computational data confirms the key role of electrostatic interactions in the PA-IIL/saccharide binding.

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Year:  2009        PMID: 19277730     DOI: 10.1007/s00894-009-0464-7

Source DB:  PubMed          Journal:  J Mol Model        ISSN: 0948-5023            Impact factor:   1.810


  16 in total

Review 1.  Glycosylation and the immune system.

Authors:  P M Rudd; T Elliott; P Cresswell; I A Wilson; R A Dwek
Journal:  Science       Date:  2001-03-23       Impact factor: 47.728

2.  UCSF Chimera--a visualization system for exploratory research and analysis.

Authors:  Eric F Pettersen; Thomas D Goddard; Conrad C Huang; Gregory S Couch; Daniel M Greenblatt; Elaine C Meng; Thomas E Ferrin
Journal:  J Comput Chem       Date:  2004-10       Impact factor: 3.376

3.  Solvated interaction energy (SIE) for scoring protein-ligand binding affinities. 1. Exploring the parameter space.

Authors:  Marwen Naïm; Sathesh Bhat; Kathryn N Rankin; Sheldon Dennis; Shafinaz F Chowdhury; Imran Siddiqi; Piotr Drabik; Traian Sulea; Christopher I Bayly; Araz Jakalian; Enrico O Purisima
Journal:  J Chem Inf Model       Date:  2007 Jan-Feb       Impact factor: 4.956

Review 4.  Exploiting the defensive sugars of HIV-1 for drug and vaccine design.

Authors:  Christopher N Scanlan; John Offer; Nicole Zitzmann; Raymond A Dwek
Journal:  Nature       Date:  2007-04-26       Impact factor: 49.962

5.  Rapid measurement of binding constants and heats of binding using a new titration calorimeter.

Authors:  T Wiseman; S Williston; J F Brandts; L N Lin
Journal:  Anal Biochem       Date:  1989-05-15       Impact factor: 3.365

6.  Structural basis for the interaction between human milk oligosaccharides and the bacterial lectin PA-IIL of Pseudomonas aeruginosa.

Authors:  Stéphanie Perret; Charles Sabin; Claire Dumon; Martina Pokorná; Catherine Gautier; Oxana Galanina; Shahov Ilia; Nicolai Bovin; Magali Nicaise; Michel Desmadril; Nechama Gilboa-Garber; Michaela Wimmerová; Edward P Mitchell; Anne Imberty
Journal:  Biochem J       Date:  2005-07-15       Impact factor: 3.857

7.  Pseudomonas aeruginosa lectins.

Authors:  N Gilboa-Garber
Journal:  Methods Enzymol       Date:  1982       Impact factor: 1.600

8.  Solvent interactions determine carbohydrate conformation.

Authors:  K N Kirschner; R J Woods
Journal:  Proc Natl Acad Sci U S A       Date:  2001-08-28       Impact factor: 11.205

9.  Engineering of PA-IIL lectin from Pseudomonas aeruginosa - Unravelling the role of the specificity loop for sugar preference.

Authors:  Jan Adam; Martina Pokorná; Charles Sabin; Edward P Mitchell; Anne Imberty; Michaela Wimmerová
Journal:  BMC Struct Biol       Date:  2007-06-01

10.  TRITON: a graphical tool for ligand-binding protein engineering.

Authors:  Martin Prokop; Jan Adam; Zdenek Kríz; Michaela Wimmerová; Jaroslav Koca
Journal:  Bioinformatics       Date:  2008-07-04       Impact factor: 6.937

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  3 in total

1.  Exhaustive search and solvated interaction energy (SIE) for virtual screening and affinity prediction.

Authors:  Traian Sulea; Hervé Hogues; Enrico O Purisima
Journal:  J Comput Aided Mol Des       Date:  2011-12-25       Impact factor: 3.686

2.  Carbohydrate force fields.

Authors:  B Lachele Foley; Matthew B Tessier; Robert J Woods
Journal:  Wiley Interdiscip Rev Comput Mol Sci       Date:  2012-07

Review 3.  Computational glycoscience: characterizing the spatial and temporal properties of glycans and glycan-protein complexes.

Authors:  Robert J Woods; Matthew B Tessier
Journal:  Curr Opin Struct Biol       Date:  2010-08-12       Impact factor: 6.809

  3 in total

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