Literature DB >> 19273285

Roles of translational motion of water molecules in sustaining life.

Masahiro Kinoshita1.   

Abstract

By reviewing the results of our analyses based on statistical-mechanical theories, we point out that the entropic effect arising from the translational motion of water molecules is a principal driving force in a variety of self-assembling and ordering processes in biological systems such as protein folding, molecular recognition, and ordered aggregation of protein molecules. The great entropic loss for the biomolecules accompanying these processes is largely compensated by a great entropic gain of the water that is present in the system. The microscopic mechanisms of protein folding and denaturation, receptor-ligand binding, and amyloid-fibril formation are discussed in detail. We describe an effort to develop a unique method for predicting the native structure of a protein. The roles of NaCl and cosolute molecules are also briefly discussed.

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Year:  2009        PMID: 19273285     DOI: 10.2741/3463

Source DB:  PubMed          Journal:  Front Biosci (Landmark Ed)        ISSN: 2768-6698


  6 in total

1.  Correlation analysis for heat denaturation of Trp-cage miniprotein with explicit solvent.

Authors:  Fumitaka Kamo; Ryosuke Ishizuka; Nobuyuki Matubayasi
Journal:  Protein Sci       Date:  2015-08-06       Impact factor: 6.725

Review 2.  A new theoretical approach to biological self-assembly.

Authors:  Masahiro Kinoshita
Journal:  Biophys Rev       Date:  2013-02-01

Review 3.  Theoretical identification of thermostabilizing amino acid mutations for G-protein-coupled receptors.

Authors:  Takeshi Murata; Satoshi Yasuda; Tomohiko Hayashi; Masahiro Kinoshita
Journal:  Biophys Rev       Date:  2020-04-08

4.  Binding of an RNA aptamer and a partial peptide of a prion protein: crucial importance of water entropy in molecular recognition.

Authors:  Tomohiko Hayashi; Hiraku Oshima; Tsukasa Mashima; Takashi Nagata; Masato Katahira; Masahiro Kinoshita
Journal:  Nucleic Acids Res       Date:  2014-05-06       Impact factor: 16.971

Review 5.  Importance of water entropy in rotation mechanism of F1-ATPase.

Authors:  Takashi Yoshidome
Journal:  Biophysics (Nagoya-shi)       Date:  2011-11-18

Review 6.  Importance of translational entropy of water in biological self-assembly processes like protein folding.

Authors:  Masahiro Kinoshita
Journal:  Int J Mol Sci       Date:  2009-03-11       Impact factor: 6.208

  6 in total

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