Literature DB >> 19272906

Improving the fitness of high-dimensional biomechanical models via data-driven stochastic exploration.

Veronica J Santos1, Carlos D Bustamante, Francisco J Valero-Cuevas.   

Abstract

The field of complex biomechanical modeling has begun to rely on Monte Carlo techniques to investigate the effects of parameter variability and measurement uncertainty on model outputs, search for optimal parameter combinations, and define model limitations. However, advanced stochastic methods to perform data-driven explorations, such as Markov chain Monte Carlo (MCMC), become necessary as the number of model parameters increases. Here, we demonstrate the feasibility and, what to our knowledge is, the first use of an MCMC approach to improve the fitness of realistically large biomechanical models. We used a Metropolis-Hastings algorithm to search increasingly complex parameter landscapes (3, 8, 24, and 36 dimensions) to uncover underlying distributions of anatomical parameters of a "truth model" of the human thumb on the basis of simulated kinematic data (thumbnail location, orientation, and linear and angular velocities) polluted by zero-mean, uncorrelated multivariate Gaussian "measurement noise." Driven by these data, ten Markov chains searched each model parameter space for the subspace that best fit the data (posterior distribution). As expected, the convergence time increased, more local minima were found, and marginal distributions broadened as the parameter space complexity increased. In the 36-D scenario, some chains found local minima but the majority of chains converged to the true posterior distribution (confirmed using a cross-validation dataset), thus demonstrating the feasibility and utility of these methods for realistically large biomechanical problems.

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Year:  2008        PMID: 19272906      PMCID: PMC2841988          DOI: 10.1109/TBME.2008.2006033

Source DB:  PubMed          Journal:  IEEE Trans Biomed Eng        ISSN: 0018-9294            Impact factor:   4.538


  22 in total

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Authors:  Jeffrey A Reinbolt; Jaco F Schutte; Benjamin J Fregly; Byung Il Koh; Raphael T Haftka; Alan D George; Kim H Mitchell
Journal:  J Biomech       Date:  2005-03       Impact factor: 2.712

2.  The axes of rotation of the thumb carpometacarpal joint.

Authors:  A Hollister; W L Buford; L M Myers; D J Giurintano; A Novick
Journal:  J Orthop Res       Date:  1992-05       Impact factor: 3.494

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Authors:  Joseph E Langenderfer; Richard E Hughes; James E Carpenter
Journal:  Comput Methods Biomech Biomed Engin       Date:  2005-10       Impact factor: 1.763

4.  Reported anatomical variability naturally leads to multimodal distributions of Denavit-Hartenberg parameters for the human thumb.

Authors:  Veronica J Santos; Francisco J Valero-Cuevas
Journal:  IEEE Trans Biomed Eng       Date:  2006-02       Impact factor: 4.538

5.  A probabilistic model of glenohumeral external rotation strength for healthy normals and rotator cuff tear cases.

Authors:  Joseph E Langenderfer; James E Carpenter; Marjorie E Johnson; Kai-Nan An; Richard E Hughes
Journal:  Ann Biomed Eng       Date:  2006-02-11       Impact factor: 3.934

6.  Monte Carlo simulation of a planar shoulder model.

Authors:  R E Hughes; K N An
Journal:  Med Biol Eng Comput       Date:  1997-09       Impact factor: 2.602

7.  A stochastic model of trunk muscle coactivation during trunk bending.

Authors:  G A Mirka; W S Marras
Journal:  Spine (Phila Pa 1976)       Date:  1993-09-01       Impact factor: 3.468

8.  A markerless motion capture system to study musculoskeletal biomechanics: visual hull and simulated annealing approach.

Authors:  S Corazza; L Mündermann; A M Chaudhari; T Demattio; C Cobelli; T P Andriacchi
Journal:  Ann Biomed Eng       Date:  2006-05-05       Impact factor: 3.934

9.  Incorporating uncertainty in mechanical properties for finite element-based evaluation of bone mechanics.

Authors:  Peter J Laz; Joshua Q Stowe; Mark A Baldwin; Anthony J Petrella; Paul J Rullkoetter
Journal:  J Biomech       Date:  2007-05-01       Impact factor: 2.712

10.  The axes of rotation of the thumb interphalangeal and metacarpophalangeal joints.

Authors:  A Hollister; D J Giurintano; W L Buford; L M Myers; A Novick
Journal:  Clin Orthop Relat Res       Date:  1995-11       Impact factor: 4.176

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  5 in total

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2.  Computational Models for Neuromuscular Function.

Authors:  Francisco J Valero-Cuevas; Heiko Hoffmann; Manish U Kurse; Jason J Kutch; Evangelos A Theodorou
Journal:  IEEE Rev Biomed Eng       Date:  2009

Review 3.  Spinal cord modularity: evolution, development, and optimization and the possible relevance to low back pain in man.

Authors:  Simon F Giszter; Corey B Hart; Sheri P Silfies
Journal:  Exp Brain Res       Date:  2009-10-09       Impact factor: 1.972

4.  Uncertainty in Limb Configuration Makes Minimal Contribution to Errors Between Observed and Predicted Forces in a Musculoskeletal Model of the Rat Hindlimb.

Authors:  Qi Wei; Dinesh K Pai; Matthew C Tresch
Journal:  IEEE Trans Biomed Eng       Date:  2018-02       Impact factor: 4.538

5.  Extraction of features from sleep EEG for Bayesian assessment of brain development.

Authors:  Vitaly Schetinin; Livija Jakaite
Journal:  PLoS One       Date:  2017-03-21       Impact factor: 3.240

  5 in total

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