Literature DB >> 19259946

Assembling heterochromatin in the appropriate places: A boost is needed.

Laura N Rusche1, Patrick J Lynch.   

Abstract

Heterochromatin, or condensed chromatin, has the potential to encroach into what ordinarily would be euchromatin and repress resident genes. We explore how heterochromatin is restricted to the appropriate regions of the genome, using Saccharomyces cerevisiae as a case study and emphasizing two under-appreciated aspects of silenced chromatin. First, the capacity of silenced chromatin to propagate along a chromosome is limited by the intrinsic instability of the structure. We argue that this limited potential to spread is an important factor restricting silenced chromatin to the vicinity of recruitment sites (silencers). Second, this limited capacity to spread creates the need for additional mechanisms to stabilize silenced chromatin at the required locations. Such mechanisms include the use of multiple silencers and higher-order arrangements of the chromatin fiber. Therefore, to understand how silenced chromatin is restricted to the appropriate genomic locations, researchers must take into account the mechanisms by which silenced chromatin is stabilized in appropriate locations. J. Cell. Physiol. 219: 525-528, 2009. (c) 2009 Wiley-Liss, Inc.

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Year:  2009        PMID: 19259946      PMCID: PMC4385302          DOI: 10.1002/jcp.21749

Source DB:  PubMed          Journal:  J Cell Physiol        ISSN: 0021-9541            Impact factor:   6.384


  22 in total

1.  Cohabitation of insulators and silencing elements in yeast subtelomeric regions.

Authors:  G Fourel; E Revardel; C E Koering; E Gilson
Journal:  EMBO J       Date:  1999-05-04       Impact factor: 11.598

2.  Chromosomal gradient of histone acetylation established by Sas2p and Sir2p functions as a shield against gene silencing.

Authors:  Akatsuki Kimura; Takashi Umehara; Masami Horikoshi
Journal:  Nat Genet       Date:  2002-10-15       Impact factor: 38.330

3.  Modulation of heterochromatin protein 1 dynamics in primary Mammalian cells.

Authors:  Richard Festenstein; Stamatis N Pagakis; Kyoko Hiragami; Debbie Lyon; Alain Verreault; Belaid Sekkali; Dimitris Kioussis
Journal:  Science       Date:  2003-01-31       Impact factor: 47.728

4.  RNA polymerase III and RNA polymerase II promoter complexes are heterochromatin barriers in Saccharomyces cerevisiae.

Authors:  D Donze; R T Kamakaka
Journal:  EMBO J       Date:  2001-02-01       Impact factor: 11.598

5.  A nonhistone protein-protein interaction required for assembly of the SIR complex and silent chromatin.

Authors:  Adam D Rudner; Brian E Hall; Tom Ellenberger; Danesh Moazed
Journal:  Mol Cell Biol       Date:  2005-06       Impact factor: 4.272

6.  Yeast heterochromatin is a dynamic structure that requires silencers continuously.

Authors:  T H Cheng; M R Gartenberg
Journal:  Genes Dev       Date:  2000-02-15       Impact factor: 11.361

7.  Genome-wide, as opposed to local, antisilencing is mediated redundantly by the euchromatic factors Set1 and H2A.Z.

Authors:  Shivkumar Venkatasubrahmanyam; William W Hwang; Marc D Meneghini; Amy Hin Yan Tong; Hiten D Madhani
Journal:  Proc Natl Acad Sci U S A       Date:  2007-10-09       Impact factor: 11.205

8.  Silent domains are assembled continuously from the telomere and are defined by promoter distance and strength, and by SIR3 dosage.

Authors:  H Renauld; O M Aparicio; P D Zierath; B L Billington; S K Chhablani; D E Gottschling
Journal:  Genes Dev       Date:  1993-07       Impact factor: 11.361

9.  HMR-I is an origin of replication and a silencer in Saccharomyces cerevisiae.

Authors:  D H Rivier; J L Ekena; J Rine
Journal:  Genetics       Date:  1999-02       Impact factor: 4.562

10.  Lysine methylation within the globular domain of histone H3 by Dot1 is important for telomeric silencing and Sir protein association.

Authors:  Huck Hui Ng; Qin Feng; Hengbin Wang; Hediye Erdjument-Bromage; Paul Tempst; Yi Zhang; Kevin Struhl
Journal:  Genes Dev       Date:  2002-06-15       Impact factor: 11.361

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  6 in total

1.  An auxiliary silencer and a boundary element maintain high levels of silencing proteins at HMR in Saccharomyces cerevisiae.

Authors:  Patrick J Lynch; Laura N Rusche
Journal:  Genetics       Date:  2010-02-22       Impact factor: 4.562

Review 2.  The Nuts and Bolts of Transcriptionally Silent Chromatin in Saccharomyces cerevisiae.

Authors:  Marc R Gartenberg; Jeffrey S Smith
Journal:  Genetics       Date:  2016-08       Impact factor: 4.562

Review 3.  Defining the replication program through the chromatin landscape.

Authors:  Queying Ding; David M MacAlpine
Journal:  Crit Rev Biochem Mol Biol       Date:  2011-04       Impact factor: 8.250

4.  A protosilencer of subtelomeric gene expression in Candida glabrata with unique properties.

Authors:  Alejandro Juárez-Reyes; Candy Y Ramírez-Zavaleta; Luis Medina-Sánchez; Alejandro De Las Peñas; Irene Castaño
Journal:  Genetics       Date:  2011-11-02       Impact factor: 4.562

Review 5.  Mating-type genes and MAT switching in Saccharomyces cerevisiae.

Authors:  James E Haber
Journal:  Genetics       Date:  2012-05       Impact factor: 4.562

6.  A single heterochromatin boundary element imposes position-independent antisilencing activity in Saccharomyces cerevisiae minichromosomes.

Authors:  Sangita A Chakraborty; Robert T Simpson; Sergei A Grigoryev
Journal:  PLoS One       Date:  2011-09-16       Impact factor: 3.240

  6 in total

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