Literature DB >> 19258456

Identification of two distinct inactive conformations of the beta2-adrenergic receptor reconciles structural and biochemical observations.

Ron O Dror1, Daniel H Arlow, David W Borhani, Morten Ø Jensen, Stefano Piana, David E Shaw.   

Abstract

Fully understanding the mechanisms of signaling proteins such as G protein-coupled receptors (GPCRs) will require the characterization of their conformational states and the pathways connecting those states. The recent crystal structures of the beta(2)- and beta(1)-adrenergic receptors in a nominally inactive state constituted a major advance toward this goal, but also raised new questions. Although earlier biochemical observations had suggested that these receptors possessed a set of contacts between helices 3 and 6, known as the ionic lock, which was believed to form a molecular switch for receptor activation, the crystal structures lacked these contacts. The unexpectedly broken ionic lock has raised questions about the true conformation(s) of the inactive state and the role of the ionic lock in receptor activation and signaling. To address these questions, we performed microsecond-timescale molecular dynamics simulations of the beta(2)-adrenergic receptor (beta(2)AR) in multiple wild-type and mutant forms. In wild-type simulations, the ionic lock formed reproducibly, bringing the intracellular ends of helices 3 and 6 together to adopt a conformation similar to that found in inactive rhodopsin. Our results suggest that inactive beta(2)AR exists in equilibrium between conformations with the lock formed and the lock broken, whether or not the cocrystallized ligand is present. These findings, along with the formation of several secondary structural elements in the beta(2)AR loops during our simulations, may provide a more comprehensive picture of the inactive state of the beta-adrenergic receptors, reconciling the crystal structures with biochemical studies.

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Year:  2009        PMID: 19258456      PMCID: PMC2650503          DOI: 10.1073/pnas.0811065106

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  47 in total

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Authors:  Tetsuji Okada; Minoru Sugihara; Ana-Nicoleta Bondar; Marcus Elstner; Peter Entel; Volker Buss
Journal:  J Mol Biol       Date:  2004-09-10       Impact factor: 5.469

Review 2.  Conformational complexity of G-protein-coupled receptors.

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Journal:  Trends Pharmacol Sci       Date:  2007-07-13       Impact factor: 14.819

3.  Structural biology: A moving story of receptors.

Authors:  Thue W Schwartz; Wayne L Hubbell
Journal:  Nature       Date:  2008-09-25       Impact factor: 49.962

4.  Insights into signaling from the beta2-adrenergic receptor structure.

Authors:  Martin Audet; Michel Bouvier
Journal:  Nat Chem Biol       Date:  2008-07       Impact factor: 15.040

5.  Internal hydration increases during activation of the G-protein-coupled receptor rhodopsin.

Authors:  Alan Grossfield; Michael C Pitman; Scott E Feller; Olivier Soubias; Klaus Gawrisch
Journal:  J Mol Biol       Date:  2008-05-22       Impact factor: 5.469

6.  Atomistic insights into rhodopsin activation from a dynamic model.

Authors:  Irina G Tikhonova; Robert B Best; Stanislav Engel; Marvin C Gershengorn; Gerhard Hummer; Stefano Costanzi
Journal:  J Am Chem Soc       Date:  2008-07-12       Impact factor: 15.419

7.  Structure of a beta1-adrenergic G-protein-coupled receptor.

Authors:  Tony Warne; Maria J Serrano-Vega; Jillian G Baker; Rouslan Moukhametzianov; Patricia C Edwards; Richard Henderson; Andrew G W Leslie; Christopher G Tate; Gebhard F X Schertler
Journal:  Nature       Date:  2008-06-25       Impact factor: 49.962

8.  The 2.6 angstrom crystal structure of a human A2A adenosine receptor bound to an antagonist.

Authors:  Veli-Pekka Jaakola; Mark T Griffith; Michael A Hanson; Vadim Cherezov; Ellen Y T Chien; J Robert Lane; Adriaan P Ijzerman; Raymond C Stevens
Journal:  Science       Date:  2008-10-02       Impact factor: 47.728

9.  Electrostatic properties of membrane lipids coupled to metarhodopsin II formation in visual transduction.

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10.  Measurement of the millisecond activation switch of G protein-coupled receptors in living cells.

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Journal:  Nat Biotechnol       Date:  2003-06-15       Impact factor: 54.908

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  117 in total

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Review 6.  Nanomaterials in biological environment: a review of computer modelling studies.

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Journal:  Eur Biophys J       Date:  2010-12-14       Impact factor: 1.733

7.  Structural insights into conformational stability of wild-type and mutant beta1-adrenergic receptor.

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Journal:  Biophys J       Date:  2010-07-21       Impact factor: 4.033

8.  The role of a sodium ion binding site in the allosteric modulation of the A(2A) adenosine G protein-coupled receptor.

Authors:  Hugo Gutiérrez-de-Terán; Arnault Massink; David Rodríguez; Wei Liu; Gye Won Han; Jeremiah S Joseph; Ilia Katritch; Laura H Heitman; Lizi Xia; Adriaan P Ijzerman; Vadim Cherezov; Vsevolod Katritch; Raymond C Stevens
Journal:  Structure       Date:  2013-11-07       Impact factor: 5.006

9.  Interactions between fengycin and model bilayers quantified by coarse-grained molecular dynamics.

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10.  A role for a specific cholesterol interaction in stabilizing the Apo configuration of the human A(2A) adenosine receptor.

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Journal:  Structure       Date:  2009-12-09       Impact factor: 5.006

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