Literature DB >> 19257479

Inferring maps of forces inside cell membrane microdomains.

J-B Masson1, D Casanova, S Türkcan, G Voisinne, M R Popoff, M Vergassola, A Alexandrou.   

Abstract

Mapping of the forces on biomolecules in cell membranes has spurred the development of effective labels, e.g., organic fluorophores and nanoparticles, to track trajectories of single biomolecules. Standard methods use particular statistics, namely the mean square displacement, to analyze the underlying dynamics. Here, we introduce general inference methods to fully exploit information in the experimental trajectories, providing sharp estimates of the forces and the diffusion coefficients in membrane microdomains. Rapid and reliable convergence of the inference scheme is demonstrated on trajectories generated numerically. The method is then applied to infer forces and potentials acting on the receptor of the toxin labeled by lanthanide-ion nanoparticles. Our scheme is applicable to any labeled biomolecule and results show its general relevance for membrane compartmentation.

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Year:  2009        PMID: 19257479     DOI: 10.1103/PhysRevLett.102.048103

Source DB:  PubMed          Journal:  Phys Rev Lett        ISSN: 0031-9007            Impact factor:   9.161


  16 in total

1.  A Bayesian inference scheme to extract diffusivity and potential fields from confined single-molecule trajectories.

Authors:  Silvan Türkcan; Antigoni Alexandrou; Jean-Baptiste Masson
Journal:  Biophys J       Date:  2012-05-15       Impact factor: 4.033

2.  Observing the confinement potential of bacterial pore-forming toxin receptors inside rafts with nonblinking Eu(3+)-doped oxide nanoparticles.

Authors:  Silvan Türkcan; Jean-Baptiste Masson; Didier Casanova; Geneviève Mialon; Thierry Gacoin; Jean-Pierre Boilot; Michel R Popoff; Antigoni Alexandrou
Journal:  Biophys J       Date:  2012-05-15       Impact factor: 4.033

3.  Inference in particle tracking experiments by passing messages between images.

Authors:  M Chertkov; L Kroc; F Krzakala; M Vergassola; L Zdeborová
Journal:  Proc Natl Acad Sci U S A       Date:  2010-04-05       Impact factor: 11.205

Review 4.  Probing cellular events, one quantum dot at a time.

Authors:  Fabien Pinaud; Samuel Clarke; Assa Sittner; Maxime Dahan
Journal:  Nat Methods       Date:  2010-03-30       Impact factor: 28.547

5.  Bayesian Uncertainty Quantification for Bond Energies and Mobilities Using Path Integral Analysis.

Authors:  Joshua C Chang; Pak-Wing Fok; Tom Chou
Journal:  Biophys J       Date:  2015-09-01       Impact factor: 4.033

6.  Receptor displacement in the cell membrane by hydrodynamic force amplification through nanoparticles.

Authors:  Silvan Türkcan; Maximilian U Richly; Cedric I Bouzigues; Jean-Marc Allain; Antigoni Alexandrou
Journal:  Biophys J       Date:  2013-07-02       Impact factor: 4.033

7.  Quantifying biomolecule diffusivity using an optimal Bayesian method.

Authors:  Guillaume Voisinne; Antigoni Alexandrou; Jean-Baptiste Masson
Journal:  Biophys J       Date:  2010-02-17       Impact factor: 4.033

8.  Errors in Energy Landscapes Measured with Particle Tracking.

Authors:  Michał J Bogdan; Thierry Savin
Journal:  Biophys J       Date:  2018-07-03       Impact factor: 4.033

9.  Mapping the energy and diffusion landscapes of membrane proteins at the cell surface using high-density single-molecule imaging and Bayesian inference: application to the multiscale dynamics of glycine receptors in the neuronal membrane.

Authors:  Jean-Baptiste Masson; Patrice Dionne; Charlotte Salvatico; Marianne Renner; Christian G Specht; Antoine Triller; Maxime Dahan
Journal:  Biophys J       Date:  2014-01-07       Impact factor: 4.033

10.  In vivo determination of fluctuating forces during endosome trafficking using a combination of active and passive microrheology.

Authors:  Damien Robert; Thi-Hanh Nguyen; François Gallet; Claire Wilhelm
Journal:  PLoS One       Date:  2010-04-06       Impact factor: 3.240

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