Literature DB >> 19255441

Revising the nitrogen cycle in the Peruvian oxygen minimum zone.

Phyllis Lam1, Gaute Lavik, Marlene M Jensen, Jack van de Vossenberg, Markus Schmid, Dagmar Woebken, Dimitri Gutiérrez, Rudolf Amann, Mike S M Jetten, Marcel M M Kuypers.   

Abstract

The oxygen minimum zone (OMZ) of the Eastern Tropical South Pacific (ETSP) is 1 of the 3 major regions in the world where oceanic nitrogen is lost in the pelagic realm. The recent identification of anammox, instead of denitrification, as the likely prevalent pathway for nitrogen loss in this OMZ raises strong questions about our understanding of nitrogen cycling and organic matter remineralization in these waters. Without detectable denitrification, it is unclear how NH(4)(+) is remineralized from organic matter and sustains anammox or how secondary NO(2)(-) maxima arise within the OMZ. Here we show that in the ETSP-OMZ, anammox obtains 67% or more of NO(2)(-) from nitrate reduction, and 33% or less from aerobic ammonia oxidation, based on stable-isotope pairing experiments corroborated by functional gene expression analyses. Dissimilatory nitrate reduction to ammonium was detected in an open-ocean setting. It occurred throughout the OMZ and could satisfy a substantial part of the NH(4)(+) requirement for anammox. The remaining NH(4)(+) came from remineralization via nitrate reduction and probably from microaerobic respiration. Altogether, deep-sea NO(3)(-) accounted for only approximately 50% of the nitrogen loss in the ETSP, rather than 100% as commonly assumed. Because oceanic OMZs seem to be expanding because of global climate change, it is increasingly imperative to incorporate the correct nitrogen-loss pathways in global biogeochemical models to predict more accurately how the nitrogen cycle in our future ocean may respond.

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Year:  2009        PMID: 19255441      PMCID: PMC2649953          DOI: 10.1073/pnas.0812444106

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  16 in total

Review 1.  Functional, biochemical and genetic diversity of prokaryotic nitrate reductases.

Authors:  D J Richardson; B C Berks; D A Russell; S Spiro; C J Taylor
Journal:  Cell Mol Life Sci       Date:  2001-02       Impact factor: 9.261

Review 2.  Marine microorganisms and global nutrient cycles.

Authors:  Kevin R Arrigo
Journal:  Nature       Date:  2005-09-15       Impact factor: 49.962

3.  Oceanography: a marine nitrogen cycle fix?

Authors:  Douglas G Capone; Angela N Knapp
Journal:  Nature       Date:  2007-01-11       Impact factor: 49.962

4.  Enrichment and characterization of marine anammox bacteria associated with global nitrogen gas production.

Authors:  Jack van de Vossenberg; Jayne E Rattray; Wim Geerts; Boran Kartal; Laura van Niftrik; Elly G van Donselaar; Jaap S Sinninghe Damsté; Marc Strous; Mike S M Jetten
Journal:  Environ Microbiol       Date:  2008-05-06       Impact factor: 5.491

5.  Spatial coupling of nitrogen inputs and losses in the ocean.

Authors:  Curtis Deutsch; Jorge L Sarmiento; Daniel M Sigman; Nicolas Gruber; John P Dunne
Journal:  Nature       Date:  2007-01-11       Impact factor: 49.962

6.  Massive nitrogen loss from the Benguela upwelling system through anaerobic ammonium oxidation.

Authors:  Marcel M M Kuypers; Gaute Lavik; Dagmar Woebken; Markus Schmid; Bernhard M Fuchs; Rudolf Amann; Bo Barker Jørgensen; Mike S M Jetten
Journal:  Proc Natl Acad Sci U S A       Date:  2005-04-20       Impact factor: 11.205

Review 7.  Cell biology and molecular basis of denitrification.

Authors:  W G Zumft
Journal:  Microbiol Mol Biol Rev       Date:  1997-12       Impact factor: 11.056

8.  Anammox bacteria disguised as denitrifiers: nitrate reduction to dinitrogen gas via nitrite and ammonium.

Authors:  Boran Kartal; Marcel M M Kuypers; Gaute Lavik; Jos Schalk; Huub J M Op den Camp; Mike S M Jetten; Marc Strous
Journal:  Environ Microbiol       Date:  2007-03       Impact factor: 5.491

Review 9.  Impacts of atmospheric anthropogenic nitrogen on the open ocean.

Authors:  R A Duce; J LaRoche; K Altieri; K R Arrigo; A R Baker; D G Capone; S Cornell; F Dentener; J Galloway; R S Ganeshram; R J Geider; T Jickells; M M Kuypers; R Langlois; P S Liss; S M Liu; J J Middelburg; C M Moore; S Nickovic; A Oschlies; T Pedersen; J Prospero; R Schlitzer; S Seitzinger; L L Sorensen; M Uematsu; O Ulloa; M Voss; B Ward; L Zamora
Journal:  Science       Date:  2008-05-16       Impact factor: 47.728

10.  Expression of denitrification enzymes in response to the dissolved oxygen level and respiratory substrate in continuous culture of Pseudomonas stutzeri.

Authors:  H Körner; W G Zumft
Journal:  Appl Environ Microbiol       Date:  1989-07       Impact factor: 4.792

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  147 in total

1.  Environmental factors shape sediment anammox bacterial communities in hypernutrified Jiaozhou Bay, China.

Authors:  Hongyue Dang; Ruipeng Chen; Lin Wang; Lizhong Guo; Pingping Chen; Zuwang Tang; Fang Tian; Shaozheng Li; Martin G Klotz
Journal:  Appl Environ Microbiol       Date:  2010-09-10       Impact factor: 4.792

2.  Subsurface cycling of nitrogen and anaerobic aromatic hydrocarbon biodegradation revealed by nucleic Acid and metabolic biomarkers.

Authors:  Jane M Yagi; Joseph M Suflita; Lisa M Gieg; Christopher M DeRito; Che-Ok Jeon; Eugene L Madsen
Journal:  Appl Environ Microbiol       Date:  2010-03-26       Impact factor: 4.792

3.  Abundance and diversity of archaeal ammonia oxidizers in a coastal groundwater system.

Authors:  Daniel R Rogers; Karen L Casciotti
Journal:  Appl Environ Microbiol       Date:  2010-10-22       Impact factor: 4.792

Review 4.  Geological constraints on the origin of oxygenic photosynthesis.

Authors:  James Farquhar; Aubrey L Zerkle; Andrey Bekker
Journal:  Photosynth Res       Date:  2010-09-30       Impact factor: 3.573

5.  Marine Oxygen-Deficient Zones Harbor Depauperate Denitrifying Communities Compared to Novel Genetic Diversity in Coastal Sediments.

Authors:  Jennifer L Bowen; David Weisman; Michie Yasuda; Amal Jayakumar; Hilary G Morrison; Bess B Ward
Journal:  Microb Ecol       Date:  2015-02-28       Impact factor: 4.552

6.  New twist on nitrogen cycling in oceanic oxygen minimum zones.

Authors:  Jonathan P Zehr
Journal:  Proc Natl Acad Sci U S A       Date:  2009-03-17       Impact factor: 11.205

7.  Molecular detection of anaerobic ammonium-oxidizing (anammox) bacteria in high-temperature petroleum reservoirs.

Authors:  Hui Li; Shuo Chen; Bo-Zhong Mu; Ji-Dong Gu
Journal:  Microb Ecol       Date:  2010-08-26       Impact factor: 4.552

Review 8.  Microbial ecology of expanding oxygen minimum zones.

Authors:  Jody J Wright; Kishori M Konwar; Steven J Hallam
Journal:  Nat Rev Microbiol       Date:  2012-05-14       Impact factor: 60.633

Review 9.  The microbial nitrogen-cycling network.

Authors:  Marcel M M Kuypers; Hannah K Marchant; Boran Kartal
Journal:  Nat Rev Microbiol       Date:  2018-02-05       Impact factor: 60.633

10.  Refined NrfA phylogeny improves PCR-based nrfA gene detection.

Authors:  Allana Welsh; Joanne C Chee-Sanford; Lynn M Connor; Frank E Löffler; Robert A Sanford
Journal:  Appl Environ Microbiol       Date:  2014-01-24       Impact factor: 4.792

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