Literature DB >> 19247291

A computational approach to correct arginine-to-proline conversion in quantitative proteomics.

Sung Kyu Park, Lujian Liao, Jin Young Kim, John R Yates.   

Abstract

Entities:  

Mesh：

Substances：

Year:  2009        PMID： 19247291      PMCID： PMC2946183          DOI： 10.1038/nmeth0309-184

Source DB:  PubMed          Journal:  Nat Methods        ISSN： 1548-7091            Impact factor:   28.547


× No keyword cloud information.
  6 in total

Review 1.  Mass spectrometry-based proteomics turns quantitative.

Authors:  Shao-En Ong; Matthias Mann
Journal:  Nat Chem Biol       Date:  2005-10       Impact factor: 15.040

2.  Quantitative proteomics to study mitogen-activated protein kinases.

Authors:  Blagoy Blagoev; Matthias Mann
Journal:  Methods       Date:  2006-11       Impact factor: 3.608

3.  A quantitative analysis software tool for mass spectrometry-based proteomics.

Authors:  Sung Kyu Park; John D Venable; Tao Xu; John R Yates
Journal:  Nat Methods       Date:  2008-03-16       Impact factor: 28.547

4.  An experimental correction for arginine-to-proline conversion artifacts in SILAC-based quantitative proteomics.

Authors:  Dennis Van Hoof; Martijn W H Pinkse; Dorien Ward-Van Oostwaard; Christine L Mummery; Albert J R Heck; Jeroen Krijgsveld
Journal:  Nat Methods       Date:  2007-09       Impact factor: 28.547

5.  Quantitative proteomic analysis of primary neurons reveals diverse changes in synaptic protein content in fmr1 knockout mice.

Authors:  Lujian Liao; Sung Kyu Park; Tao Xu; Peter Vanderklish; John R Yates
Journal:  Proc Natl Acad Sci U S A       Date:  2008-09-30       Impact factor: 11.205

6.  Prevention of amino acid conversion in SILAC experiments with embryonic stem cells.

Authors:  Sean C Bendall; Chris Hughes; Morag H Stewart; Brad Doble; Mickie Bhatia; Gilles A Lajoie
Journal:  Mol Cell Proteomics       Date:  2008-05-16       Impact factor: 5.911
  6 in total
  10 in total

1.  Quantitative proteomics analysis reveals molecular networks regulated by epidermal growth factor receptor level in head and neck cancer.

Authors:  Wei Yang; Quan Cai; Vivian W Y Lui; Patrick A Everley; Jayoung Kim; Neil Bhola; Kelly M Quesnelle; Bruce R Zetter; Hanno Steen; Michael R Freeman; Jennifer R Grandis
Journal:  J Proteome Res       Date:  2010-06-04       Impact factor: 4.466

2.  In-depth quantitative cardiac proteomics combining electron transfer dissociation and the metalloendopeptidase Lys-N with the SILAC mouse.

Authors:  Arjen Scholten; Shabaz Mohammed; Teck Y Low; Sara Zanivan; Toon A B van Veen; Bernard Delanghe; Albert J R Heck
Journal:  Mol Cell Proteomics       Date:  2011-06-24       Impact factor: 5.911

3.  SILAC surrogates: rescue of quantitative information for orphan analytes in spike-in SILAC experiments.

Authors:  Jason M Gilmore; Jeffrey A Milloy; Scott A Gerber
Journal:  Anal Chem       Date:  2013-11-07       Impact factor: 6.986

4.  2nSILAC for Quantitative Proteomics of Prototrophic Baker's Yeast.

Authors:  Stefan Dannenmaier; Silke Oeljeklaus; Bettina Warscheid
Journal:  Methods Mol Biol       Date:  2021

5.  A genetic engineering solution to the "arginine conversion problem" in stable isotope labeling by amino acids in cell culture (SILAC).

Authors:  Claudia C Bicho; Flavia de Lima Alves; Zhuo A Chen; Juri Rappsilber; Kenneth E Sawin
Journal:  Mol Cell Proteomics       Date:  2010-05-10       Impact factor: 5.911

6.  Bioinformatics Tools for Mass Spectrometry-Based High-Throughput Quantitative Proteomics Platforms.

Authors:  Alexey V Nefedov; Miroslaw J Gilski; Rovshan G Sadygov
Journal:  Curr Proteomics       Date:  2011-07       Impact factor: 0.837

7.  Accurate proteome-wide protein quantification from high-resolution 15N mass spectra.

Authors:  Zia Khan; Sasan Amini; Joshua S Bloom; Cristian Ruse; Amy A Caudy; Leonid Kruglyak; Mona Singh; David H Perlman; Saeed Tavazoie
Journal:  Genome Biol       Date:  2011-12-19       Impact factor: 13.583

8.  Mitochondrial proline catabolism activates Ras1/cAMP/PKA-induced filamentation in Candida albicans.

Authors:  Fitz Gerald S Silao; Meliza Ward; Kicki Ryman; Axel Wallström; Björn Brindefalk; Klas Udekwu; Per O Ljungdahl
Journal:  PLoS Genet       Date:  2019-02-11       Impact factor: 5.917

9.  Time-resolved proteomics of adenovirus infected cells.

Authors:  Alberto Valdés; Hongxing Zhao; Ulf Pettersson; Sara Bergström Lind
Journal:  PLoS One       Date:  2018-09-25       Impact factor: 3.240

10.  Complete Native Stable Isotope Labeling by Amino Acids of Saccharomyces cerevisiae for Global Proteomic Analysis.

Authors:  Stefan Dannenmaier; Sebastian B Stiller; Marcel Morgenstern; Philipp Lübbert; Silke Oeljeklaus; Nils Wiedemann; Bettina Warscheid
Journal:  Anal Chem       Date:  2018-08-23       Impact factor: 6.986
  10 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.