Literature DB >> 19246616

Utilizing the molecular gateway: the path to personalized cancer management.

Jonathan B Overdevest1, Dan Theodorescu, Jae K Lee.   

Abstract

BACKGROUND: Personalized medicine is the provision of focused prevention, detection, prognostic, and therapeutic efforts according to an individual's genetic composition. The actualization of personalized medicine will require combining a patient's conventional clinical data with bioinformatics-based molecular-assessment profiles. This synergistic approach offers tangible benefits, such as heightened specificity in the molecular classification of cancer subtypes, improved prognostic accuracy, targeted development of new therapies, novel applications for old therapies, and tailored selection and delivery of chemotherapeutics. CONTENT: Our ability to personalize cancer management is rapidly expanding through biotechnological advances in the postgenomic era. The platforms of genomics, proteomics, single-nucleotide polymorphism profiling and haplotype mapping, high-throughput genomic sequencing, and pharmacogenomics constitute the mechanisms for the molecular assessment of a patient's tumor. The complementary data derived during these assessments is processed through bioinformatics analysis to offer unique insights for linking expression profiles to disease detection, tumor response to chemotherapy, and patient survival. Together, these approaches permit improved physician capacity to assess risk, target therapies, and tailor a chemotherapeutic treatment course.
SUMMARY: Personalized medicine is poised for rapid growth as the insights provided by new bioinformatics models are integrated with current procedures for assessing and treating cancer patients. Integration of these biological platforms will require refinement of tissue-processing and analysis techniques, particularly in clinical pathology, to overcome obstacles in customizing our ability to treat cancer.

Entities:  

Mesh:

Year:  2009        PMID: 19246616      PMCID: PMC4529063          DOI: 10.1373/clinchem.2008.118554

Source DB:  PubMed          Journal:  Clin Chem        ISSN: 0009-9147            Impact factor:   8.327


  63 in total

Review 1.  Protein microarrays and proteomics.

Authors:  Gavin MacBeath
Journal:  Nat Genet       Date:  2002-12       Impact factor: 38.330

Review 2.  Protein microarrays: meeting analytical challenges for clinical applications.

Authors:  Lance A Liotta; Virginia Espina; Arpita I Mehta; Valerie Calvert; Kevin Rosenblatt; David Geho; Peter J Munson; Lynn Young; Julia Wulfkuhle; Emanuel F Petricoin
Journal:  Cancer Cell       Date:  2003-04       Impact factor: 31.743

3.  Prediction of chemosensitivity for patients with acute myeloid leukemia, according to expression levels of 28 genes selected by genome-wide complementary DNA microarray analysis.

Authors:  Jun-ichi Okutsu; Tatsuhiko Tsunoda; Yasuyuki Kaneta; Toyomasa Katagiri; Osamu Kitahara; Hitoshi Zembutsu; Rempei Yanagawa; Shuichi Miyawaki; Kazutaka Kuriyama; Nobuyuki Kubota; Yukihiro Kimura; Kohmei Kubo; Fumiharu Yagasaki; Toshio Higa; Hirokuni Taguchi; Tadasu Tobita; Hideki Akiyama; Akihiro Takeshita; Yan-Hua Wang; Toshiko Motoji; Ryuzo Ohno; Yusuke Nakamura
Journal:  Mol Cancer Ther       Date:  2002-10       Impact factor: 6.261

Review 4.  Epigenetics in cancer: implications for early detection and prevention.

Authors:  Mukesh Verma; Sudhir Srivastava
Journal:  Lancet Oncol       Date:  2002-12       Impact factor: 41.316

Review 5.  Proteomic applications for the early detection of cancer.

Authors:  Julia D Wulfkuhle; Lance A Liotta; Emanuel F Petricoin
Journal:  Nat Rev Cancer       Date:  2003-04       Impact factor: 60.716

Review 6.  Genetic testing for cancer risk.

Authors:  B Ponder
Journal:  Science       Date:  1997-11-07       Impact factor: 47.728

Review 7.  Pharmacodiagnostics and targeted therapies - a rational approach for individualizing medical anticancer therapy in breast cancer.

Authors:  Jan Trøst Jørgensen; Kirsten Vang Nielsen; Bent Ejlertsen
Journal:  Oncologist       Date:  2007-04

8.  Dicer, Drosha, and outcomes in patients with ovarian cancer.

Authors:  William M Merritt; Yvonne G Lin; Liz Y Han; Aparna A Kamat; Whitney A Spannuth; Rosemarie Schmandt; Diana Urbauer; Len A Pennacchio; Jan-Fang Cheng; Alpa M Nick; Michael T Deavers; Alexandra Mourad-Zeidan; Hua Wang; Peter Mueller; Marc E Lenburg; Joe W Gray; Samuel Mok; Michael J Birrer; Gabriel Lopez-Berestein; Robert L Coleman; Menashe Bar-Eli; Anil K Sood
Journal:  N Engl J Med       Date:  2008-12-18       Impact factor: 91.245

Review 9.  Commercialized multigene predictors of clinical outcome for breast cancer.

Authors:  Jeffrey S Ross; Christos Hatzis; W Fraser Symmans; Lajos Pusztai; Gabriel N Hortobágyi
Journal:  Oncologist       Date:  2008-05

10.  A pilot study of high-throughput, sequence-based mutational profiling of primary human acute myeloid leukemia cell genomes.

Authors:  Timothy J Ley; Patrick J Minx; Matthew J Walter; Rhonda E Ries; Hui Sun; Michael McLellan; John F DiPersio; Daniel C Link; Michael H Tomasson; Timothy A Graubert; Howard McLeod; Hanna Khoury; Mark Watson; William Shannon; Kathryn Trinkaus; Sharon Heath; James W Vardiman; Michael A Caligiuri; Clara D Bloomfield; Jeffrey D Milbrandt; Elaine R Mardis; Richard K Wilson
Journal:  Proc Natl Acad Sci U S A       Date:  2003-11-12       Impact factor: 11.205

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  15 in total

1.  Regulatory approval of cancer risk-reducing (chemopreventive) drugs: moving what we have learned into the clinic.

Authors:  Frank L Meyskens; Gregory A Curt; Dean E Brenner; Gary Gordon; Ronald B Herberman; Olivera Finn; Gary J Kelloff; Samir N Khleif; Caroline C Sigman; Eva Szabo
Journal:  Cancer Prev Res (Phila)       Date:  2011-03

2.  A novel inhibitor of DNA polymerase beta enhances the ability of temozolomide to impair the growth of colon cancer cells.

Authors:  Aruna S Jaiswal; Sanjeev Banerjee; Harekrushna Panda; Charles D Bulkin; Tadahide Izumi; Fazlul H Sarkar; David A Ostrov; Satya Narayan
Journal:  Mol Cancer Res       Date:  2009-12-08       Impact factor: 5.852

Review 3.  Integrating contextual miRNA and protein signatures for diagnostic and treatment decisions in cancer.

Authors:  Lorenzo F Sempere
Journal:  Expert Rev Mol Diagn       Date:  2011-11       Impact factor: 5.225

Review 4.  Radiomics in surgical oncology: applications and challenges.

Authors:  Travis L Williams; Lily V Saadat; Mithat Gonen; Alice Wei; Richard K G Do; Amber L Simpson
Journal:  Comput Assist Surg (Abingdon)       Date:  2021-12       Impact factor: 2.357

5.  Comparison of global versus epidermal growth factor receptor pathway profiling for prediction of lapatinib sensitivity in bladder cancer.

Authors:  Dmytro M Havaleshko; Steven Christopher Smith; HyungJun Cho; Sooyoung Cheon; Charles R Owens; Jae K Lee; Lance A Liotta; Virginia Espina; Julia D Wulfkuhle; Emanuel F Petricoin; Dan Theodorescu
Journal:  Neoplasia       Date:  2009-11       Impact factor: 5.715

6.  New aspects in the differential diagnosis and therapy of bladder pain syndrome/interstitial cystitis.

Authors:  Jochen Neuhaus; Thilo Schwalenberg; Lars-Christian Horn; Henry Alexander; Jens-Uwe Stolzenburg
Journal:  Adv Urol       Date:  2011-10-19

7.  Inferring causal genomic alterations in breast cancer using gene expression data.

Authors:  Linh M Tran; Bin Zhang; Zhan Zhang; Chunsheng Zhang; Tao Xie; John R Lamb; Hongyue Dai; Eric E Schadt; Jun Zhu
Journal:  BMC Syst Biol       Date:  2011-08-01

8.  Polymorphisms and a haplotype in heparanase gene associations with the progression and prognosis of gastric cancer in a northern Chinese population.

Authors:  Ai-Lin Li; Yong-Xi Song; Zhen-Ning Wang; Peng Gao; Yuan Miao; Jin-Liang Zhu; Zhen-Yu Yue; Hui-Mian Xu
Journal:  PLoS One       Date:  2012-01-20       Impact factor: 3.240

9.  Overexpression of LAPTM4B-35: a novel marker of poor prognosis of prostate cancer.

Authors:  Hongtuan Zhang; Qiang Wei; Ranlu Liu; Shiyong Qi; Peihe Liang; Can Qi; Andi Wang; Bin Sheng; Liang Li; Yong Xu
Journal:  PLoS One       Date:  2014-03-20       Impact factor: 3.240

10.  A multiplex two-color real-time PCR method for quality-controlled molecular diagnostic testing of FFPE samples.

Authors:  Jiyoun Yeo; Erin L Crawford; Thomas M Blomquist; Lauren M Stanoszek; Rachel E Dannemiller; Jill Zyrek; Luis E De Las Casas; Sadik A Khuder; James C Willey
Journal:  PLoS One       Date:  2014-02-21       Impact factor: 3.240

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