Literature DB >> 19246381

A free-standing condensation enzyme catalyzing ester bond formation in C-1027 biosynthesis.

Shuangjun Lin1, Steven G Van Lanen, Ben Shen.   

Abstract

Nonribosomal peptide synthetases (NRPSs) catalyze the biosynthesis of many biologically active peptides and typically are modular, with each extension module minimally consisting of a condensation, an adenylation, and a peptidyl carrier protein domain responsible for incorporation of an amino acid into the growing peptide chain. C-1027 is a chromoprotein antitumor antibiotic whose enediyne chromophore consists of an enediyne core, a deoxy aminosugar, a benzoxazolinate, and a beta-amino acid moiety. Bioinformatics analysis suggested that the activation and incorporation of the beta-amino acid moiety into C-1027 follows an NRPS mechanism whereby biosynthetic intermediates are tethered to the peptidyl carrier protein SgcC2. Here, we report the biochemical characterization of SgcC5, an NRPS condensation enzyme that catalyzes ester bond formation between the SgcC2-tethered (S)-3-chloro-5-hydroxy-beta-tyrosine and (R)-1-phenyl-1,2-ethanediol, a mimic of the enediyne core. SgcC5 uses (S)-3-chloro-5-hydroxy-beta-tyrosyl-SgcC2 as the donor substrate and exhibits regiospecificity for the C-2 hydroxyl group of the enediyne core mimic as the acceptor substrate. Remarkably, SgcC5 is also capable of catalyzing amide bond formation, albeit with significantly reduced efficiency, between (S)-3-chloro-5-hydroxy-beta-tyrosyl-(S)-SgcC2 and (R)-2-amino-1-phenyl-1-ethanol, an alternative enediyne core mimic bearing an amine at its C-2 position. Thus, SgcC5 is capable of catalyzing both ester and amide bond formation, providing an evolutionary link between amide- and ester-forming condensation enzymes.

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Year:  2009        PMID: 19246381      PMCID: PMC2657464          DOI: 10.1073/pnas.0808880106

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  38 in total

Review 1.  Nonribosomal peptide synthetases involved in the production of medically relevant natural products.

Authors:  Elizabeth A Felnagle; Emily E Jackson; Yolande A Chan; Angela M Podevels; Andrew D Berti; Matthew D McMahon; Michael G Thomas
Journal:  Mol Pharm       Date:  2008-01-25       Impact factor: 4.939

2.  Crystal structure of the termination module of a nonribosomal peptide synthetase.

Authors:  Alan Tanovic; Stefan A Samel; Lars-Oliver Essen; Mohamed A Marahiel
Journal:  Science       Date:  2008-06-26       Impact factor: 47.728

3.  The EntF and EntE adenylation domains of Escherichia coli enterobactin synthetase: sequestration and selectivity in acyl-AMP transfers to thiolation domain cosubstrates.

Authors:  D E Ehmann; C A Shaw-Reid; H C Losey; C T Walsh
Journal:  Proc Natl Acad Sci U S A       Date:  2000-03-14       Impact factor: 11.205

4.  Cloning and characterization of a phosphopantetheinyl transferase from Streptomyces verticillus ATCC15003, the producer of the hybrid peptide-polyketide antitumor drug bleomycin.

Authors:  C Sánchez; L Du; D J Edwards; M D Toney; B Shen
Journal:  Chem Biol       Date:  2001-07

5.  The biosynthetic gene cluster for the antitumor drug bleomycin from Streptomyces verticillus ATCC15003 supporting functional interactions between nonribosomal peptide synthetases and a polyketide synthase.

Authors:  L Du; C Sánchez; M Chen; D J Edwards; B Shen
Journal:  Chem Biol       Date:  2000-08

6.  Construction of hybrid peptide synthetases by module and domain fusions.

Authors:  H D Mootz; D Schwarzer; M A Marahiel
Journal:  Proc Natl Acad Sci U S A       Date:  2000-05-23       Impact factor: 11.205

7.  Characterization of the saframycin A gene cluster from Streptomyces lavendulae NRRL 11002 revealing a nonribosomal peptide synthetase system for assembling the unusual tetrapeptidyl skeleton in an iterative manner.

Authors:  Lei Li; Wei Deng; Jie Song; Wei Ding; Qun-Fei Zhao; Chao Peng; Wei-Wen Song; Gong-Li Tang; Wen Liu
Journal:  J Bacteriol       Date:  2007-11-02       Impact factor: 3.490

Review 8.  Enediyne anticancer antibiotic lidamycin: chemistry, biology and pharmacology.

Authors:  Rong-guang Shao; Yong-su Zhen
Journal:  Anticancer Agents Med Chem       Date:  2008-02       Impact factor: 2.505

9.  Characterization of the two-component, FAD-dependent monooxygenase SgcC that requires carrier protein-tethered substrates for the biosynthesis of the enediyne antitumor antibiotic C-1027.

Authors:  Shuangjun Lin; Steven G Van Lanen; Ben Shen
Journal:  J Am Chem Soc       Date:  2008-04-22       Impact factor: 15.419

10.  Characterization of the maduropeptin biosynthetic gene cluster from Actinomadura madurae ATCC 39144 supporting a unifying paradigm for enediyne biosynthesis.

Authors:  Steven G Van Lanen; Tae-Jin Oh; Wen Liu; Evelyn Wendt-Pienkowski; Ben Shen
Journal:  J Am Chem Soc       Date:  2007-10-06       Impact factor: 15.419

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  38 in total

Review 1.  Refining and expanding nonribosomal peptide synthetase function and mechanism.

Authors:  Matt McErlean; Jonathan Overbay; Steven Van Lanen
Journal:  J Ind Microbiol Biotechnol       Date:  2019-01-23       Impact factor: 3.346

Review 2.  Explorations of catalytic domains in non-ribosomal peptide synthetase enzymology.

Authors:  Gene H Hur; Christopher R Vickery; Michael D Burkart
Journal:  Nat Prod Rep       Date:  2012-07-17       Impact factor: 13.423

Review 3.  Biosynthesis of depsipeptides, or Depsi: The peptides with varied generations.

Authors:  Diego A Alonzo; T Martin Schmeing
Journal:  Protein Sci       Date:  2020-11-02       Impact factor: 6.725

4.  Structural Insights into the Free-Standing Condensation Enzyme SgcC5 Catalyzing Ester-Bond Formation in the Biosynthesis of the Enediyne Antitumor Antibiotic C-1027.

Authors:  Chin-Yuan Chang; Jeremy R Lohman; Tingting Huang; Karolina Michalska; Lance Bigelow; Jeffrey D Rudolf; Robert Jedrzejczak; Xiaohui Yan; Ming Ma; Gyorgy Babnigg; Andrzej Joachimiak; George N Phillips; Ben Shen
Journal:  Biochemistry       Date:  2018-03-21       Impact factor: 3.162

5.  Targeted Rediscovery and Biosynthesis of the Farnesyl-Transferase Inhibitor Pepticinnamin E.

Authors:  Kevin C Santa Maria; Andrew N Chan; Erinn M O'Neill; Bo Li
Journal:  Chembiochem       Date:  2019-05-02       Impact factor: 3.164

6.  Chemoenzymatic synthesis of cryptophycin anticancer agents by an ester bond-forming non-ribosomal peptide synthetase module.

Authors:  Yousong Ding; Christopher M Rath; Kyle L Bolduc; Kristina Håkansson; David H Sherman
Journal:  J Am Chem Soc       Date:  2011-08-25       Impact factor: 15.419

7.  Identification and characterization of the pyridomycin biosynthetic gene cluster of Streptomyces pyridomyceticus NRRL B-2517.

Authors:  Tingting Huang; Yemin Wang; Jun Yin; Yanhua Du; Meifeng Tao; Jing Xu; Wenqing Chen; Shuangjun Lin; Zixin Deng
Journal:  J Biol Chem       Date:  2011-03-22       Impact factor: 5.157

8.  Manipulation of pathway regulation in Streptomyces globisporus for overproduction of the enediyne antitumor antibiotic C-1027.

Authors:  Yihua Chen; Min Yin; Geoff P Horsman; Shengxiong Huang; Ben Shen
Journal:  J Antibiot (Tokyo)       Date:  2010-06-16       Impact factor: 2.649

9.  The crystal structure of BlmI as a model for nonribosomal peptide synthetase peptidyl carrier proteins.

Authors:  Jeremy R Lohman; Ming Ma; Marianne E Cuff; Lance Bigelow; Jessica Bearden; Gyorgy Babnigg; Andrzej Joachimiak; George N Phillips; Ben Shen
Journal:  Proteins       Date:  2014-07

10.  Characterization of the SgcF epoxide hydrolase supporting an (R)-vicinal diol intermediate for enediyne antitumor antibiotic C-1027 biosynthesis.

Authors:  Shuangjun Lin; Geoffrey P Horsman; Yihua Chen; Wenli Li; Ben Shen
Journal:  J Am Chem Soc       Date:  2009-11-18       Impact factor: 15.419

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